| line |
true |
false |
branch |
|
105
|
10 |
9 |
$p{'strand'} == 1 ? : |
|
108
|
0 |
19 |
if ($residue eq 'stop') { } |
|
|
2 |
17 |
elsif ($residue eq 'start') { } |
|
|
2 |
15 |
elsif ($residue eq 'lower') { } |
|
|
2 |
13 |
elsif ($residue eq 'upper') { } |
|
113
|
1 |
1 |
$rc ? : |
|
114
|
1 |
1 |
$rc ? : |
|
168
|
14 |
9 |
$p{'strand'} == 1 ? : |
|
172
|
7 |
16 |
if (defined $regex) |
|
219
|
0 |
6 |
unless ref $seq_ref |
|
325
|
1 |
0 |
$p{'strand'} == 0 ? : |
|
341
|
0 |
0 |
$strand == 1 ? : |
|
344
|
0 |
0 |
if $cur_upper > $upper |
|
440
|
1 |
0 |
$p{'strand'} == 0 ? : |
|
451
|
1 |
1 |
$strand == 1 && $p{'strict'} != 0 || $strand == -1 && $p{'strict'} == 2 ? : |
|
464
|
0 |
20 |
if $position > $upper |
|
476
|
7 |
13 |
if ($1) { } |
|
477
|
6 |
1 |
if ($strand == -1 or not defined $lowers[$frame]) |
|
497
|
0 |
13 |
if $position > $upper |
|
508
|
1 |
1 |
if $p{'strict'} == 2 or $strand == -1 and $p{'strict'} != 0 |
|
529
|
10 |
6 |
unless defined $$lowers[$frame] |
|
535
|
3 |
3 |
if $strand == 1 |
|
542
|
5 |
7 |
if $$longest[1] - $$longest[0] < $$current[1] - $$current[0] |
|
583
|
1 |
2 |
$p{'strand'} == 0 ? : |
|
588
|
6 |
6 |
$strand == 1 ? : |
|
594
|
8 |
4 |
unless $$seq_ref =~ /$regex/ |