| line |
count |
pod |
subroutine |
|
3
|
2 |
n/a |
BEGIN |
|
4
|
2 |
n/a |
BEGIN |
|
54
|
2 |
n/a |
BEGIN |
|
114
|
0 |
Yes |
module_version |
|
118
|
0 |
n/a |
_endianness |
|
135
|
1 |
Yes |
new |
|
171
|
2 |
Yes |
open_abif |
|
212
|
2 |
n/a |
_scan_tags |
|
247
|
3 |
Yes |
close_abif |
|
263
|
2 |
Yes |
is_abif_open |
|
279
|
2 |
Yes |
is_abif_format |
|
308
|
0 |
Yes |
abif_version |
|
342
|
1 |
Yes |
num_dir_entries |
|
357
|
1 |
Yes |
data_offset |
|
369
|
0 |
Yes |
tags |
|
401
|
2 |
Yes |
get_directory |
|
472
|
2 |
Yes |
get_data_item |
|
523
|
4 |
Yes |
search_tag |
|
601
|
0 |
Yes |
write_tag |
|
810
|
0 |
Yes |
analyzed_data_for_channel |
|
842
|
0 |
Yes |
analysis_protocol_settings_name |
|
861
|
0 |
Yes |
analysis_protocol_settings_version |
|
880
|
0 |
Yes |
analysis_protocol_xml |
|
899
|
0 |
Yes |
analysis_protocol_xml_schema_version |
|
920
|
0 |
Yes |
analysis_return_code |
|
942
|
0 |
Yes |
avg_peak_spacing |
|
965
|
0 |
Yes |
basecaller_apsf |
|
987
|
0 |
Yes |
basecaller_bcp_dll |
|
1008
|
0 |
Yes |
basecaller_version |
|
1031
|
0 |
Yes |
basecalling_analysis_timestamp |
|
1052
|
0 |
Yes |
base_locations |
|
1075
|
0 |
Yes |
base_locations_edited |
|
1102
|
0 |
Yes |
base_order |
|
1130
|
0 |
Yes |
base_spacing |
|
1152
|
0 |
Yes |
buffer_tray_temperature |
|
1173
|
0 |
Yes |
capillary_number |
|
1193
|
0 |
Yes |
channel |
|
1218
|
0 |
Yes |
chem |
|
1241
|
0 |
Yes |
comment |
|
1263
|
0 |
Yes |
comment_title |
|
1282
|
0 |
Yes |
container_identifier |
|
1303
|
0 |
Yes |
container_name |
|
1322
|
0 |
Yes |
container_owner |
|
1341
|
0 |
Yes |
current |
|
1362
|
0 |
Yes |
data_collection_module_file |
|
1381
|
0 |
Yes |
data_collection_software_version |
|
1400
|
0 |
Yes |
data_collection_firmware_version |
|
1419
|
0 |
Yes |
data_collection_start_date |
|
1443
|
0 |
Yes |
data_collection_start_time |
|
1463
|
0 |
Yes |
data_collection_stop_date |
|
1486
|
0 |
Yes |
data_collection_stop_time |
|
1506
|
0 |
Yes |
detector_heater_temperature |
|
1526
|
0 |
Yes |
downsampling_factor |
|
1549
|
0 |
Yes |
dye_name |
|
1571
|
0 |
Yes |
dye_set_name |
|
1593
|
0 |
Yes |
dye_significance |
|
1619
|
0 |
Yes |
dye_type |
|
1641
|
0 |
Yes |
dye_wavelength |
|
1666
|
0 |
Yes |
edited_quality_values |
|
1688
|
0 |
Yes |
edited_quality_values_ref |
|
1710
|
0 |
Yes |
edited_sequence |
|
1727
|
0 |
Yes |
edited_sequence_length |
|
1745
|
0 |
Yes |
electrophoresis_voltage |
|
1765
|
0 |
Yes |
gel_type |
|
1784
|
0 |
Yes |
gene_mapper_analysis_method |
|
1803
|
0 |
Yes |
gene_mapper_panel_name |
|
1822
|
0 |
Yes |
gene_mapper_sample_type |
|
1841
|
0 |
Yes |
gene_scan_sample_name |
|
1860
|
0 |
Yes |
injection_time |
|
1880
|
0 |
Yes |
injection_voltage |
|
1900
|
0 |
Yes |
instrument_class |
|
1919
|
0 |
Yes |
instrument_family |
|
1938
|
0 |
Yes |
instrument_name_and_serial_number |
|
1957
|
0 |
Yes |
instrument_param |
|
1977
|
0 |
Yes |
is_capillary_machine |
|
1996
|
0 |
Yes |
laser_power |
|
2016
|
0 |
Yes |
length_to_detector |
|
2038
|
0 |
Yes |
mobility_file |
|
2058
|
0 |
Yes |
mobility_file_orig |
|
2077
|
0 |
Yes |
model_number |
|
2100
|
0 |
Yes |
noise |
|
2131
|
0 |
Yes |
num_capillaries |
|
2151
|
0 |
Yes |
num_dyes |
|
2171
|
0 |
Yes |
num_scans |
|
2191
|
0 |
Yes |
official_instrument_name |
|
2214
|
0 |
Yes |
offscale_peaks |
|
2240
|
0 |
Yes |
offscale_scans |
|
2263
|
0 |
Yes |
order_base |
|
2289
|
0 |
Yes |
peak1_location |
|
2311
|
0 |
Yes |
peak1_location_orig |
|
2335
|
0 |
Yes |
peak_area_ratio |
|
2363
|
0 |
Yes |
peaks |
|
2407
|
0 |
Yes |
pixel_bin_size |
|
2427
|
0 |
Yes |
pixels_lane |
|
2449
|
0 |
Yes |
plate_type |
|
2471
|
0 |
Yes |
plate_size |
|
2493
|
0 |
Yes |
polymer_expiration_date |
|
2514
|
0 |
Yes |
polymer_lot_number |
|
2533
|
0 |
Yes |
power |
|
2558
|
0 |
Yes |
quality_levels |
|
2581
|
0 |
Yes |
quality_values |
|
2605
|
0 |
Yes |
quality_values_ref |
|
2629
|
0 |
Yes |
raw_data_for_channel |
|
2659
|
0 |
Yes |
raw_trace |
|
2679
|
0 |
Yes |
rescaling |
|
2702
|
0 |
Yes |
results_group |
|
2723
|
0 |
Yes |
results_group_comment |
|
2745
|
0 |
Yes |
results_group_owner |
|
2766
|
0 |
Yes |
reverse_complement_flag |
|
2788
|
0 |
Yes |
run_module_name |
|
2807
|
0 |
Yes |
run_module_version |
|
2826
|
0 |
Yes |
run_module_xml_schema_version |
|
2845
|
0 |
Yes |
run_module_xml_string |
|
2864
|
0 |
Yes |
run_name |
|
2883
|
0 |
Yes |
run_protocol_name |
|
2902
|
0 |
Yes |
run_protocol_version |
|
2921
|
0 |
Yes |
run_start_date |
|
2944
|
0 |
Yes |
run_start_time |
|
2964
|
0 |
Yes |
run_stop_date |
|
2987
|
0 |
Yes |
run_stop_time |
|
3007
|
0 |
Yes |
run_temperature |
|
3030
|
0 |
Yes |
sample_file_format_version |
|
3049
|
0 |
Yes |
sample_name |
|
3068
|
0 |
Yes |
sample_tracking_id |
|
3090
|
0 |
Yes |
scanning_rate |
|
3113
|
0 |
Yes |
scan_color_data_values |
|
3140
|
0 |
Yes |
scan_numbers |
|
3166
|
0 |
Yes |
scan_number_indices |
|
3191
|
0 |
Yes |
seqscape_project_name |
|
3213
|
0 |
Yes |
seqscape_project_template |
|
3235
|
0 |
Yes |
seqscape_specimen_name |
|
3256
|
0 |
Yes |
sequence |
|
3273
|
0 |
Yes |
sequence_length |
|
3291
|
0 |
Yes |
sequencing_analysis_param_filename |
|
3314
|
0 |
Yes |
signal_level |
|
3345
|
0 |
Yes |
size_standard_filename |
|
3366
|
0 |
Yes |
snp_set_name |
|
3385
|
0 |
Yes |
start_collection_event |
|
3406
|
0 |
Yes |
start_point |
|
3428
|
0 |
Yes |
start_point_orig |
|
3448
|
0 |
Yes |
start_run_event |
|
3467
|
0 |
Yes |
stop_collection_event |
|
3488
|
0 |
Yes |
stop_point |
|
3510
|
0 |
Yes |
stop_point_orig |
|
3531
|
0 |
Yes |
stop_run_event |
|
3550
|
0 |
Yes |
temperature |
|
3571
|
0 |
Yes |
trace |
|
3593
|
0 |
Yes |
trim_probability_threshold |
|
3619
|
0 |
Yes |
trim_region |
|
3640
|
0 |
Yes |
voltage |
|
3663
|
0 |
Yes |
user |
|
3682
|
0 |
Yes |
well_id |
|
3709
|
0 |
Yes |
avg_signal_to_noise_ratio |
|
3744
|
0 |
Yes |
clear_range |
|
3773
|
0 |
Yes |
clear_range_start |
|
3825
|
0 |
Yes |
clear_range_stop |
|
3885
|
0 |
Yes |
contiguous_read_length |
|
3987
|
0 |
Yes |
length_of_read |
|
4096
|
0 |
Yes |
num_low_quality_bases |
|
4148
|
0 |
Yes |
num_high_quality_bases |
|
4204
|
0 |
Yes |
num_medium_quality_bases |
|
4255
|
0 |
Yes |
sample_score |
|
4304
|
0 |
n/a |
_bin2uint |
|
4318
|
0 |
n/a |
_uint2bin |
|
4333
|
0 |
n/a |
_bin2decimal |
|
4354
|
1 |
n/a |
_ieee2decimal |
|
4373
|
0 |
n/a |
_decimal2ieee |
|
4440
|
0 |
n/a |
_fraction2bin |
|
4459
|
0 |
n/a |
_make_date |
|
4469
|
0 |
n/a |
_make_time |
|
4482
|
0 |
n/a |
_debug |
|
4494
|
1 |
n/a |
DESTROY |
|
4501
|
2 |
n/a |
END |