Subroutine Coverage
| blib/lib/Bio/ToolBox/parser/ucsc.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
52 |
58 |
89.6
|
| pod |
22 |
24 |
91.6
|
| line |
count |
pod |
subroutine |
|
358
|
2 |
n/a |
BEGIN |
|
359
|
2 |
n/a |
BEGIN |
|
360
|
2 |
n/a |
BEGIN |
|
365
|
5 |
Yes |
new |
|
467
|
0 |
No |
version |
|
471
|
123 |
Yes |
source |
|
480
|
2 |
No |
simplify |
|
484
|
95 |
Yes |
do_gene |
|
492
|
93 |
Yes |
do_exon |
|
500
|
55 |
Yes |
do_cds |
|
508
|
53 |
Yes |
do_utr |
|
516
|
54 |
Yes |
do_codon |
|
524
|
231 |
Yes |
do_name |
|
532
|
394 |
Yes |
share |
|
540
|
234 |
Yes |
fh |
|
548
|
7 |
Yes |
open_file |
|
623
|
5 |
Yes |
load_extra_data |
|
736
|
3 |
Yes |
typelist |
|
751
|
92 |
Yes |
next_feature |
|
791
|
25 |
Yes |
next_top_feature |
|
799
|
2 |
Yes |
top_features |
|
810
|
5 |
Yes |
parse_table |
|
852
|
87 |
Yes |
find_gene |
|
925
|
2 |
Yes |
counts |
|
931
|
0 |
Yes |
from_ucsc_string |
|
944
|
0 |
Yes |
seq_ids |
|
950
|
0 |
Yes |
seq_id_lengths |
|
957
|
2 |
n/a |
BEGIN |
|
958
|
2 |
n/a |
BEGIN |
|
964
|
173 |
n/a |
new |
|
1247
|
692 |
n/a |
name |
|
1251
|
229 |
n/a |
name2 |
|
1255
|
371 |
n/a |
gene_name |
|
1259
|
195 |
n/a |
chrom |
|
1263
|
291 |
n/a |
txStart |
|
1267
|
295 |
n/a |
txEnd |
|
1271
|
243 |
n/a |
strand |
|
1275
|
811 |
n/a |
cdsStart |
|
1279
|
409 |
n/a |
cdsEnd |
|
1283
|
942 |
n/a |
exonCount |
|
1287
|
1412 |
n/a |
exonStarts |
|
1291
|
1014 |
n/a |
exonEnds |
|
1295
|
120 |
n/a |
type |
|
1299
|
243 |
n/a |
refseq |
|
1304
|
243 |
n/a |
note |
|
1309
|
173 |
n/a |
status |
|
1314
|
173 |
n/a |
completeness |
|
1319
|
493 |
n/a |
ucsc |
|
1323
|
70 |
n/a |
build_gene |
|
1392
|
173 |
n/a |
build_transcript |
|
1499
|
243 |
n/a |
update_attributes |
|
1528
|
0 |
n/a |
add_unique_attribute |
|
1544
|
122 |
n/a |
add_exons |
|
1597
|
10 |
n/a |
add_utrs |
|
1782
|
10 |
n/a |
add_cds |
|
1922
|
0 |
n/a |
add_codons |
|
2022
|
70 |
n/a |
find_gene |
|
2054
|
303 |
n/a |
find_existing_subfeature |