| line |
count |
pod |
subroutine |
|
1016
|
3 |
n/a |
BEGIN |
|
1017
|
3 |
n/a |
BEGIN |
|
1018
|
3 |
n/a |
BEGIN |
|
1025
|
3 |
n/a |
BEGIN |
|
1026
|
3 |
n/a |
BEGIN |
|
1037
|
353 |
No |
new |
|
1047
|
0 |
Yes |
data |
|
1051
|
0 |
Yes |
column_name |
|
1057
|
24 |
Yes |
feature_type |
|
1063
|
65 |
Yes |
row_index |
|
1069
|
0 |
No |
line_number |
|
1083
|
196 |
Yes |
row_values |
|
1091
|
341 |
Yes |
value |
|
1104
|
21 |
Yes |
seq_id |
|
1150
|
119 |
Yes |
start |
|
1212
|
38 |
Yes |
end |
|
1262
|
30 |
Yes |
strand |
|
1302
|
2 |
n/a |
_strand |
|
1330
|
0 |
n/a |
_from_coordinate_string |
|
1343
|
4 |
Yes |
peak |
|
1358
|
5 |
Yes |
midpoint |
|
1371
|
76 |
Yes |
display_name |
|
1401
|
3 |
Yes |
coordinate |
|
1415
|
9 |
Yes |
type |
|
1447
|
66 |
Yes |
primary_id |
|
1462
|
2 |
Yes |
length |
|
1482
|
0 |
Yes |
score |
|
1488
|
0 |
Yes |
attributes |
|
1495
|
1 |
Yes |
gff_attributes |
|
1511
|
0 |
Yes |
vcf_attributes |
|
1544
|
0 |
Yes |
rewrite_attributes |
|
1551
|
1 |
Yes |
rewrite_gff_attributes |
|
1577
|
0 |
Yes |
rewrite_vcf_attributes |
|
1625
|
4 |
Yes |
seqfeature |
|
1654
|
1 |
Yes |
segment |
|
1674
|
0 |
Yes |
get_features |
|
1691
|
0 |
Yes |
get_sequence |
|
1729
|
0 |
n/a |
_get_subfeature_sequence |
|
1764
|
0 |
n/a |
_get_subfeatures |
|
1808
|
7 |
Yes |
get_score |
|
1883
|
0 |
n/a |
_get_subfeature_scores |
|
1918
|
1 |
Yes |
get_relative_point_position_scores |
|
1978
|
4 |
Yes |
get_region_position_scores |
|
2045
|
0 |
n/a |
_get_subfeature_position_scores |
|
2149
|
10 |
Yes |
calculate_reference |
|
2210
|
0 |
n/a |
_avoid_positions |
|
2270
|
5 |
n/a |
_convert_to_relative_positions |
|
2287
|
0 |
n/a |
_process_exon_scores |
|
2319
|
0 |
Yes |
fetch_alignments |
|
2397
|
0 |
Yes |
bed_string |
|
2451
|
0 |
Yes |
gff_string |