| lib/Bio/SAGE/DataProcessing.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 15 | 52 | 28.8 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 1009 | 0 | 0 | 61 | $minLength <= length $ditag and length $ditag <= $maxLength |
| 1021 | 0 | 0 | 61 | $minLength <= length $ditag and length $ditag <= $maxLength |
| 1165 | 1 | 0 | 0 | $tag =~ /^$enzyme/ and length $tag == $$this{'protocol'}{'TAG_LENGTH'} + length($enzyme) |
| 1362 | 61 | 0 | 0 | defined ${$$this{'ditags'};}{$ditag_sequence} and $$this{'keep_duplicates'} == 0 |
| line | l | !l | condition |
|---|---|---|---|
| 322 | 0 | 1 | shift() || 'CATG' |
| 324 | 0 | 1 | shift() || 0 |
| 373 | 0 | 0 | shift() || die($PACKAGE . '::set_ditag_filter no filter specified.') |
| 404 | 0 | 0 | shift() || die($PACKAGE . '::set_tag_filter no filter specified.') |
| 550 | 1 | 0 | shift() || die($PACKAGE . q[::process_library can't be called statically.]) |
| 551 | 1 | 0 | shift() || die($PACKAGE . '::process_library no sequence data handle provided.') |
| 552 | 1 | 0 | shift() || undef |
| 1160 | 1 | 0 | shift() || die($PACKAGE . '::get_extra_base_calculation no tag argument specified.') |
| 1283 | 0 | 0 | shift() || die($PACKAGE . '::print_extra_base_calculation result hashref not provided.') |
| 1294 | 0 | 0 | $$pResults{$position}{$ditag_length}{$_} || 0 |
| 1308 | 5 | 0 | shift() || die($PACKAGE . '::__extract_ditags no sequence specified.') |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 323 | 0 | 0 | 1 | shift() || $Bio::SAGE::DataProcessing::PROTOCOL_SAGE |
| 325 | 0 | 1 | 0 | ref $this || $this |
| 1001 | 0 | 1 | 0 | shift() || $$this{'protocol'}{'MINIMUM_DITAG_LENGTH'} |
| 1002 | 0 | 1 | 0 | shift() || $$this{'protocol'}{'MAXIMUM_DITAG_LENGTH'} |
| 1284 | 0 | 0 | 0 | shift() || *STDOUT |
| 1391 | 0 | 0 | 0 | shift() || *STDOUT |