| line |
count |
pod |
subroutine |
|
6
|
6 |
n/a |
BEGIN |
|
7
|
6 |
n/a |
BEGIN |
|
8
|
6 |
n/a |
BEGIN |
|
9
|
6 |
n/a |
BEGIN |
|
10
|
6 |
n/a |
BEGIN |
|
11
|
6 |
n/a |
BEGIN |
|
12
|
6 |
n/a |
BEGIN |
|
13
|
6 |
n/a |
BEGIN |
|
27
|
2 |
n/a |
_build_fasta_file |
|
37
|
0 |
n/a |
_build__working_directory_name |
|
42
|
0 |
n/a |
_build_output_filename |
|
50
|
0 |
n/a |
_cleanup_intermediate_files |
|
56
|
8 |
n/a |
_nucleotide_fasta_file_from_gff_filename |
|
61
|
4 |
n/a |
_extracted_nucleotide_fasta_file_from_bed_filename |
|
66
|
2 |
n/a |
_unfiltered_output_filename |
|
72
|
2 |
n/a |
_create_nucleotide_fasta_file_from_gff |
|
95
|
2 |
n/a |
_extract_nucleotide_regions |
|
116
|
0 |
n/a |
_cleanup_fasta |
|
138
|
0 |
n/a |
_fastatranslate_filename |
|
143
|
2 |
n/a |
_fastatranslate |
|
158
|
2 |
n/a |
_convert_nucleotide_to_protein |
|
164
|
0 |
n/a |
_does_sequence_contain_too_many_unknowns |
|
176
|
0 |
n/a |
_filter_fasta_sequences |
|
203
|
6 |
n/a |
BEGIN |