| blib/lib/Bio/Phylo/Parsers/Nexus.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 46 | 54 | 85.1 |
| pod | n/a | ||
| line | count | pod | subroutine |
|---|---|---|---|
| 2 | 6 | n/a | BEGIN |
| 3 | 6 | n/a | BEGIN |
| 4 | 6 | n/a | BEGIN |
| 5 | 6 | n/a | BEGIN |
| 6 | 6 | n/a | BEGIN |
| 7 | 6 | n/a | BEGIN |
| 8 | 6 | n/a | BEGIN |
| 124 | 15 | n/a | _process_defaults |
| 153 | 15 | n/a | _parse |
| 165 | 6 | n/a | BEGIN |
| 236 | 15 | n/a | _stringify |
| 303 | 15 | n/a | _tokenize |
| 482 | 13 | n/a | _post_process |
| 526 | 14 | n/a | _nexus |
| 533 | 43 | n/a | _begin |
| 538 | 18 | n/a | _taxa |
| 551 | 17 | n/a | _charset |
| 576 | 19 | n/a | _taxset |
| 601 | 0 | n/a | _interleave |
| 610 | 25 | n/a | _title |
| 622 | 2 | n/a | _link |
| 639 | 22 | n/a | _dimensions |
| 645 | 39 | n/a | _ntax |
| 654 | 72 | n/a | _taxlabels |
| 669 | 0 | n/a | _blockid |
| 678 | 0 | n/a | _data |
| 687 | 9 | n/a | _characters |
| 696 | 27 | n/a | _nchar |
| 704 | 9 | n/a | _format |
| 710 | 27 | n/a | _datatype |
| 719 | 0 | n/a | _matchchar |
| 727 | 0 | n/a | _items |
| 733 | 27 | n/a | _gap |
| 744 | 27 | n/a | _missing |
| 755 | 15 | n/a | _symbols |
| 766 | 0 | n/a | _charlabels |
| 773 | 18 | n/a | _charstatelabels |
| 782 | 0 | n/a | _statelabels |
| 799 | 57 | n/a | _add_matrix_metadata |
| 828 | 48 | n/a | _add_tokens_to_row |
| 875 | 85 | n/a | _find_last_seen_taxa_block |
| 893 | 4 | n/a | _find_last_seen_matrix |
| 911 | 74 | n/a | _set_taxon |
| 929 | 132 | n/a | _resolve_taxon |
| 961 | 39 | n/a | _resolve_ambig |
| 994 | 0 | n/a | _codons |
| 1002 | 57 | n/a | _matrix |
| 1085 | 2 | n/a | _bad_format |
| 1087 | 408 | n/a | _current |
| 1090 | 5 | n/a | _trees |
| 1101 | 171 | n/a | _translate |
| 1123 | 212 | n/a | _tree |
| 1163 | 33 | n/a | _end |
| 1195 | 189 | n/a | _semicolon |