| blib/lib/Bio/NEXUS/Tree.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 29 | 47 | 61.7 |
| pod | 32 | 32 | 100.0 |
| line | count | pod | subroutine |
|---|---|---|---|
| 39 | 34 | n/a | BEGIN |
| 40 | 34 | n/a | BEGIN |
| 41 | 34 | n/a | BEGIN |
| 44 | 34 | n/a | BEGIN |
| 45 | 34 | n/a | BEGIN |
| 46 | 34 | n/a | BEGIN |
| 47 | 34 | n/a | BEGIN |
| 62 | 84 | Yes | new |
| 80 | 1 | Yes | clone |
| 100 | 2 | Yes | set_rootnode |
| 116 | 665 | Yes | get_rootnode |
| 135 | 82 | n/a | _parse_newick |
| 155 | 102 | Yes | set_name |
| 170 | 446 | Yes | get_name |
| 189 | 1 | Yes | set_as_default |
| 204 | 0 | Yes | is_default |
| 219 | 0 | Yes | set_as_unrooted |
| 234 | 0 | Yes | is_rooted |
| 249 | 82 | Yes | determine_cladogram |
| 270 | 0 | Yes | set_output_format |
| 285 | 92 | Yes | get_output_format |
| 315 | 0 | Yes | is_cladogram |
| 330 | 88 | Yes | as_string |
| 349 | 4 | Yes | as_string_inodes_nameless |
| 368 | 239 | Yes | get_nodes |
| 389 | 33 | Yes | get_node_names |
| 411 | 0 | Yes | get_distances |
| 432 | 2 | Yes | get_tree_length |
| 448 | 0 | Yes | get_support_values |
| 471 | 0 | n/a | _set_xcoord |
| 518 | 0 | n/a | _set_ycoord |
| 535 | 82 | Yes | set_depth |
| 551 | 6 | Yes | get_depth |
| 572 | 2 | Yes | max_depth |
| 589 | 31 | Yes | find |
| 606 | 0 | Yes | find_all |
| 629 | 1 | Yes | prune |
| 646 | 25 | Yes | equals |
| 653 | 0 | n/a | _equals_test |
| 670 | 0 | Yes | reroot |
| 737 | 0 | n/a | _rename_oldroot |
| 754 | 0 | n/a | _position_newroot |
| 791 | 0 | n/a | _remove_oldroot_if_superfluous |
| 817 | 2 | Yes | select_subtree |
| 846 | 0 | Yes | exclude_subtree |
| 884 | 0 | Yes | get_mrca_of_otus |
| 890 | 0 | n/a | AUTOLOAD |