| line |
true |
false |
branch |
|
117
|
665 |
0 |
if (defined $$self{'root_node'}) |
|
170
|
446 |
0 |
if (defined $_[0]{'name'}) { } |
|
251
|
66 |
16 |
if ($root->find_lengths) { } |
|
286
|
9 |
83 |
if (defined $$self{'_out_format'}) { } |
|
294
|
8 |
1012 |
if ($$node{'is_nhx'}) |
|
373
|
74 |
165 |
if not $root->get_name or $root->get_name =~ /^inode1/ |
|
393
|
229 |
175 |
if ($node->is_otu) |
|
453
|
0 |
0 |
if $boot |
|
476
|
0 |
0 |
if ($self->is_cladogram or $cladogramMethod) { } |
|
477
|
0 |
0 |
unless $cladogramMethod |
|
481
|
0 |
0 |
if ($cladogramMethod eq 'accelerated') { } |
|
|
0 |
0 |
elsif ($cladogramMethod eq 'normal') { } |
|
483
|
0 |
0 |
if ($node->is_otu) { } |
|
556
|
54 |
0 |
if $d or $d == 0 |
|
611
|
0 |
0 |
if ($name eq $node->get_name) |
|
648
|
0 |
25 |
if ($self->get_name ne $tree->get_name) |
|
655
|
0 |
0 |
if ($self->get_name ne $tree->get_name) |
|
671
|
0 |
0 |
unless (defined $outgroup_name) |
|
691
|
0 |
0 |
if ($dist_back_to_newroot and $dist_back_to_newroot == $outgroup->get_length) { } |
|
742
|
0 |
0 |
if (not $tree->find("$oldroot_name")) { } |
|
755
|
0 |
0 |
if ($outgroup->get_length) { } |
|
757
|
0 |
0 |
if ($dist_back_to_newroot) { } |
|
758
|
0 |
0 |
if ($dist_back_to_newroot < $outgroup_length and $dist_back_to_newroot > 0) { } |
|
780
|
0 |
0 |
if ($dist_back_to_newroot) |
|
792
|
0 |
0 |
if (@{$oldroot->get_children;} == 1) |
|
794
|
0 |
0 |
if (defined $oldroot->get_length or defined $oldroot_child->get_length) |
|
820
|
1 |
1 |
unless ($newroot) |
|
851
|
0 |
0 |
unless ($removenode) |
|
861
|
0 |
0 |
if ($child->get_name ne $removenode->get_name) |
|
865
|
0 |
0 |
if (@{$parent->get_children;} == 1) |
|
890
|
0 |
0 |
if $Bio::NEXUS::Tree::AUTOLOAD =~ /DESTROY$/ |
|
904
|
0 |
0 |
if (defined $synonym_for{$Bio::NEXUS::Tree::AUTOLOAD}) { } |