| blib/lib/Bio/MaxQuant/Evidence/Statistics.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 37 | 39 | 94.8 |
| pod | 32 | 32 | 100.0 |
| line | count | pod | subroutine |
|---|---|---|---|
| 3 | 2 | n/a | BEGIN |
| 4 | 2 | n/a | BEGIN |
| 5 | 2 | n/a | BEGIN |
| 7 | 2 | n/a | BEGIN |
| 8 | 2 | n/a | BEGIN |
| 9 | 2 | n/a | BEGIN |
| 10 | 2 | n/a | BEGIN |
| 58 | 8526 | Yes | new |
| 173 | 1 | Yes | parseEssentials |
| 241 | 876 | Yes | experiments |
| 255 | 5 | Yes | replicated |
| 283 | 9 | Yes | orthogonals |
| 313 | 9 | Yes | pairs |
| 334 | 2 | Yes | ids |
| 344 | 2 | Yes | sharedIds |
| 354 | 2 | Yes | uniqueIds |
| 364 | 1 | Yes | saveEssentials |
| 378 | 12 | Yes | loadEssentials |
| 392 | 8379 | Yes | extractColumnValues |
| 433 | 2 | Yes | proteinCount |
| 445 | 2 | Yes | getProteinGroupIds |
| 455 | 4 | Yes | getLeadingProteins |
| 470 | 17 | Yes | logRatios |
| 516 | 8511 | Yes | filter |
| 553 | 355 | Yes | replicateMedian |
| 582 | 2826 | Yes | deviations |
| 614 | 2827 | Yes | mean |
| 626 | 2827 | Yes | sd |
| 651 | 5654 | Yes | sum |
| 664 | 2825 | Yes | mad |
| 693 | 5202 | Yes | ttest |
| 749 | 2805 | Yes | welchs_ttest |
| 764 | 5 | Yes | replicateMedianSubtractions |
| 788 | 8834 | Yes | median |
| 805 | 866 | Yes | experimentMaximumPvalue |
| 862 | 8 | Yes | fullProteinComparison |
| 899 | 1 | Yes | fullComparison |
| 917 | 0 | Yes | direction |
| 927 | 0 | Yes | directionsDisagree |