| line |
true |
false |
branch |
|
81
|
1 |
370 |
if (not $is_dos and /\r\n/)
|
|
87
|
371 |
0 |
if $is_dos
|
|
91
|
182 |
189 |
if (/^>/) { }
|
|
|
4 |
185 |
elsif (/[^>]+>/) { }
|
|
|
0 |
185 |
elsif (/^\s*$/) { }
|
|
|
185 |
0 |
elsif ($header or $seq_type) { }
|
|
92
|
4 |
178 |
if ($header and $probably_seq_in_header) { }
|
|
|
1 |
177 |
elsif ($header) { }
|
|
104
|
9 |
355 |
if /\s+($re)\s*$/ || /\s+($re)\s*$/i and length $1 > 3
|
|
109
|
182 |
0 |
if (/^>([^\s]+)/) { }
|
|
|
0 |
0 |
elsif (/^>\s*$/) { }
|
|
110
|
0 |
182 |
if length $1 > 50
|
|
113
|
1 |
181 |
if exists $seen{$1}
|
|
124
|
1 |
3 |
if $header
|
|
132
|
0 |
185 |
if ($seq_type and not /^$seq_type$/i) { }
|
|
134
|
0 |
0 |
if (@unknown > 1) { }
|
|
140
|
180 |
5 |
if (/^$pre$/i) { }
|
|
|
0 |
5 |
elsif (/^$nre$/i) { }
|
|
146
|
5 |
0 |
if (@unknown > 0) { }
|
|
159
|
1 |
0 |
if (keys %{$self->_error_cache;} > 0) { }
|
|
169
|
16 |
1 |
unless defined $self->_error_cache->{$line}
|
|
180
|
131 |
45 |
unless $c =~ /$re/i
|
|
193
|
4 |
0 |
if (length $seq >= $len) { }
|