Subroutine Coverage
| blib/lib/Bio/Gonzales/SummarizedExperiment.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
45 |
91 |
49.4
|
| pod |
49 |
54 |
90.7
|
| line |
count |
pod |
subroutine |
|
3
|
1 |
n/a |
BEGIN |
|
4
|
1 |
n/a |
BEGIN |
|
5
|
1 |
n/a |
BEGIN |
|
6
|
1 |
n/a |
BEGIN |
|
8
|
1 |
n/a |
BEGIN |
|
9
|
1 |
n/a |
BEGIN |
|
11
|
1 |
n/a |
BEGIN |
|
12
|
1 |
n/a |
BEGIN |
|
13
|
1 |
n/a |
BEGIN |
|
14
|
1 |
n/a |
BEGIN |
|
16
|
1 |
n/a |
BEGIN |
|
18
|
1 |
n/a |
BEGIN |
|
19
|
1 |
n/a |
BEGIN |
|
21
|
1 |
n/a |
BEGIN |
|
25
|
1 |
n/a |
BEGIN |
|
26
|
1 |
n/a |
BEGIN |
|
36
|
0 |
Yes |
data |
|
38
|
0 |
Yes |
header |
|
41
|
0 |
Yes |
slurp_assay |
|
50
|
0 |
Yes |
spew_assay |
|
63
|
4 |
n/a |
_reorder |
|
80
|
4 |
Yes |
sort |
|
92
|
0 |
Yes |
shuffle |
|
102
|
0 |
n/a |
_idx |
|
106
|
0 |
n/a |
__ANON__ |
|
110
|
0 |
Yes |
row_idx |
|
112
|
0 |
n/a |
__ANON__ |
|
116
|
15 |
Yes |
col_idx |
|
118
|
24 |
n/a |
__ANON__ |
|
122
|
1 |
Yes |
transpose |
|
124
|
3 |
n/a |
__ANON__ |
|
125
|
3 |
n/a |
__ANON__ |
|
126
|
3 |
n/a |
__ANON__ |
|
140
|
0 |
Yes |
make_consistent |
|
143
|
0 |
n/a |
_idx_grep |
|
145
|
0 |
n/a |
__ANON__ |
|
146
|
0 |
n/a |
__ANON__ |
|
150
|
0 |
No |
row_idx_grep |
|
156
|
0 |
No |
col_idx_grep |
|
162
|
1 |
Yes |
add_col |
|
180
|
1 |
Yes |
cbind |
|
218
|
0 |
Yes |
add_cols |
|
222
|
10 |
Yes |
group |
|
226
|
22 |
Yes |
ncol |
|
232
|
4 |
Yes |
nrow |
|
235
|
0 |
Yes |
as_hash |
|
244
|
0 |
Yes |
encode_as_json |
|
250
|
0 |
Yes |
json_spew |
|
257
|
4 |
Yes |
subset |
|
297
|
5 |
n/a |
_invert_idcs |
|
309
|
6 |
Yes |
merge |
|
410
|
0 |
Yes |
inconsistencies |
|
419
|
3 |
n/a |
_is_rectangular_matrix |
|
433
|
3 |
Yes |
clone |
|
448
|
0 |
Yes |
rbind |
|
477
|
0 |
n/a |
_rbind |
|
498
|
0 |
Yes |
dim |
|
503
|
3 |
n/a |
_max_dim |
|
518
|
0 |
No |
fill_assay |
|
525
|
3 |
n/a |
_Fill_2d |
|
546
|
0 |
n/a |
_na_fill_1d |
|
560
|
0 |
Yes |
add_rows |
|
563
|
0 |
Yes |
aggregate |
|
567
|
0 |
Yes |
aggregate_by_idcs |
|
596
|
11 |
Yes |
col_names_to_idcs |
|
602
|
14 |
n/a |
__ANON__ |
|
607
|
0 |
Yes |
aggregate_by_names |
|
614
|
10 |
Yes |
group_by_idcs |
|
659
|
0 |
Yes |
group_by_names |
|
668
|
0 |
Yes |
names_to_idcs |
|
672
|
0 |
No |
c2i |
|
679
|
0 |
Yes |
col_idx_map |
|
682
|
0 |
Yes |
row_idx_map |
|
690
|
0 |
Yes |
col_rename |
|
699
|
0 |
Yes |
row_apply |
|
711
|
1 |
No |
element_apply |
|
725
|
0 |
Yes |
col_apply |
|
728
|
0 |
n/a |
__ANON__ |
|
738
|
0 |
Yes |
apply |
|
750
|
1 |
Yes |
slice_by_idcs |
|
772
|
1 |
Yes |
has_col_names |
|
777
|
1 |
Yes |
has_col_data |
|
782
|
0 |
Yes |
has_row_data |
|
787
|
0 |
Yes |
has_row_names |
|
792
|
0 |
Yes |
extract_col_by_idx |
|
799
|
0 |
Yes |
extract_col_by_name |
|
804
|
1 |
Yes |
slice_by_names |
|
810
|
0 |
Yes |
each |
|
816
|
0 |
Yes |
uniq |
|
818
|
1 |
n/a |
BEGIN |
|
822
|
0 |
n/a |
__ANON__ |