| blib/lib/Bio/DB/USeq.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 62 | 111 | 55.8 |
| pod | 37 | 39 | 94.8 |
| line | count | pod | subroutine |
|---|---|---|---|
| 861 | 1 | n/a | BEGIN |
| 862 | 1 | n/a | BEGIN |
| 863 | 1 | n/a | BEGIN |
| 864 | 1 | n/a | BEGIN |
| 865 | 1 | n/a | BEGIN |
| 867 | 1 | n/a | BEGIN |
| 875 | 2 | Yes | new |
| 910 | 2 | Yes | open |
| 946 | 1 | Yes | clone |
| 960 | 9 | Yes | zip |
| 964 | 4 | No | name |
| 972 | 1 | Yes | seq_ids |
| 977 | 7 | Yes | length |
| 985 | 8 | Yes | stranded |
| 989 | 0 | Yes | attributes |
| 995 | 1 | Yes | attribute |
| 1006 | 1 | Yes | type |
| 1010 | 0 | Yes | version |
| 1014 | 0 | Yes | genome |
| 1018 | 1 | Yes | chr_stats |
| 1089 | 1 | Yes | chr_mean |
| 1095 | 0 | Yes | chr_stdev |
| 1103 | 0 | Yes | global_stats |
| 1152 | 0 | Yes | global_mean |
| 1157 | 0 | Yes | global_stdev |
| 1164 | 2 | Yes | slices |
| 1169 | 0 | Yes | slice_seq_id |
| 1175 | 1088 | Yes | slice_start |
| 1181 | 2021 | Yes | slice_end |
| 1187 | 4 | Yes | slice_strand |
| 1193 | 1020 | Yes | slice_type |
| 1199 | 6 | Yes | slice_obs_number |
| 1205 | 0 | Yes | slice_feature |
| 1225 | 1 | Yes | segment |
| 1243 | 2 | Yes | features |
| 1302 | 0 | No | get_features_by_type |
| 1308 | 0 | Yes | get_features_by_location |
| 1320 | 0 | Yes | get_feature_by_id |
| 1342 | 0 | Yes | get_feature_by_name |
| 1347 | 3 | Yes | get_seq_stream |
| 1377 | 1 | Yes | scores |
| 1409 | 0 | Yes | observations |
| 1441 | 1 | n/a | _parse_metadata |
| 1469 | 2 | n/a | _parse_members |
| 1548 | 5 | n/a | _get_coordinates |
| 1573 | 6 | n/a | _translate_coordinates_to_slices |
| 1611 | 6 | n/a | _clear_buffer |
| 1623 | 1016 | n/a | _load_slice |
| 1659 | 0 | n/a | _load_s_slice |
| 1683 | 0 | n/a | _load_sf_slice |
| 1707 | 0 | n/a | _load_st_slice |
| 1741 | 0 | n/a | _load_ss_slice |
| 1767 | 6 | n/a | _load_ssf_slice |
| 1793 | 0 | n/a | _load_sst_slice |
| 1825 | 1 | n/a | _load_ssft_slice |
| 1857 | 0 | n/a | _load_i_slice |
| 1881 | 0 | n/a | _load_if_slice |
| 1905 | 0 | n/a | _load_it_slice |
| 1939 | 0 | n/a | _load_ii_slice |
| 1965 | 0 | n/a | _load_iif_slice |
| 1991 | 0 | n/a | _load_iit_slice |
| 2023 | 0 | n/a | _load_iift_slice |
| 2055 | 0 | n/a | _load_is_slice |
| 2081 | 0 | n/a | _load_isf_slice |
| 2107 | 0 | n/a | _load_ist_slice |
| 2139 | 0 | n/a | _load_isft_slice |
| 2170 | 1000 | n/a | _mean_score |
| 2195 | 10 | n/a | _stat_summary |
| 2240 | 1 | n/a | _rewrite_metadata |
| 2276 | 2 | Yes | binMean |
| 2282 | 1 | Yes | binVariance |
| 2293 | 1 | Yes | binStdev |
| 2303 | 1 | n/a | BEGIN |
| 2306 | 13 | n/a | new |
| 2315 | 16 | n/a | type |
| 2320 | 0 | n/a | chr_stats |
| 2326 | 0 | n/a | chr_mean |
| 2332 | 0 | n/a | chr_stdev |
| 2338 | 0 | n/a | global_stats |
| 2344 | 0 | n/a | global_mean |
| 2350 | 0 | n/a | global_stdev |
| 2359 | 1 | n/a | BEGIN |
| 2362 | 1 | n/a | new |
| 2370 | 1 | n/a | scores |
| 2380 | 0 | n/a | features |
| 2393 | 1 | n/a | get_seq_stream |
| 2408 | 0 | n/a | slices |
| 2416 | 0 | n/a | coverage |
| 2423 | 0 | n/a | wiggle |
| 2430 | 0 | n/a | statistical_summary |
| 2437 | 0 | n/a | observations |
| 2448 | 1 | n/a | BEGIN |
| 2451 | 4 | n/a | new |
| 2531 | 10 | n/a | next_seq |
| 2544 | 0 | n/a | next_feature |
| 2549 | 6 | n/a | _next_region |
| 2590 | 2 | n/a | _next_wiggle |
| 2680 | 2 | n/a | _next_summary |
| 2708 | 1 | n/a | BEGIN |
| 2713 | 1 | n/a | new |
| 2723 | 1 | n/a | coverage |
| 2729 | 1 | n/a | wiggle |
| 2734 | 0 | n/a | gff3_string |
| 2750 | 0 | n/a | statistical_summary |
| 2783 | 0 | n/a | get_seq_stream |
| 2799 | 1 | n/a | BEGIN |
| 2802 | 1 | n/a | new |
| 2815 | 1 | n/a | statistical_summary |
| 2866 | 0 | n/a | score |
| 2875 | 0 | n/a | gff3_string |
| 2888 | 0 | n/a | get_seq_stream |