| blib/lib/Bio/DB/USeq.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 63 | 111 | 56.7 |
| pod | 37 | 39 | 94.8 |
| line | count | pod | subroutine |
|---|---|---|---|
| 859 | 1 | n/a | BEGIN |
| 860 | 1 | n/a | BEGIN |
| 861 | 1 | n/a | BEGIN |
| 862 | 1 | n/a | BEGIN |
| 863 | 1 | n/a | BEGIN |
| 865 | 1 | n/a | BEGIN |
| 873 | 2 | Yes | new |
| 908 | 2 | Yes | open |
| 944 | 1 | Yes | clone |
| 958 | 9 | Yes | zip |
| 962 | 4 | No | name |
| 970 | 1 | Yes | seq_ids |
| 975 | 8 | Yes | length |
| 983 | 8 | Yes | stranded |
| 987 | 0 | Yes | attributes |
| 993 | 1 | Yes | attribute |
| 1004 | 1 | Yes | type |
| 1008 | 0 | Yes | version |
| 1012 | 0 | Yes | genome |
| 1016 | 1 | Yes | chr_stats |
| 1049 | 1 | Yes | chr_mean |
| 1055 | 0 | Yes | chr_stdev |
| 1063 | 0 | Yes | global_stats |
| 1112 | 0 | Yes | global_mean |
| 1117 | 0 | Yes | global_stdev |
| 1124 | 2 | Yes | slices |
| 1129 | 0 | Yes | slice_seq_id |
| 1135 | 1087 | Yes | slice_start |
| 1141 | 2020 | Yes | slice_end |
| 1147 | 4 | Yes | slice_strand |
| 1153 | 1020 | Yes | slice_type |
| 1159 | 6 | Yes | slice_obs_number |
| 1165 | 0 | Yes | slice_feature |
| 1185 | 1 | Yes | segment |
| 1203 | 2 | Yes | features |
| 1262 | 0 | No | get_features_by_type |
| 1268 | 0 | Yes | get_features_by_location |
| 1280 | 0 | Yes | get_feature_by_id |
| 1302 | 0 | Yes | get_feature_by_name |
| 1307 | 3 | Yes | get_seq_stream |
| 1337 | 1 | Yes | scores |
| 1356 | 0 | Yes | observations |
| 1388 | 1 | n/a | _parse_metadata |
| 1416 | 2 | n/a | _parse_members |
| 1488 | 5 | n/a | _get_coordinates |
| 1513 | 6 | n/a | _translate_coordinates_to_slices |
| 1551 | 6 | n/a | _clear_buffer |
| 1563 | 1016 | n/a | _load_slice |
| 1599 | 0 | n/a | _load_s_slice |
| 1623 | 0 | n/a | _load_sf_slice |
| 1647 | 0 | n/a | _load_st_slice |
| 1681 | 0 | n/a | _load_ss_slice |
| 1707 | 6 | n/a | _load_ssf_slice |
| 1733 | 0 | n/a | _load_sst_slice |
| 1765 | 1 | n/a | _load_ssft_slice |
| 1797 | 0 | n/a | _load_i_slice |
| 1821 | 0 | n/a | _load_if_slice |
| 1845 | 0 | n/a | _load_it_slice |
| 1879 | 0 | n/a | _load_ii_slice |
| 1905 | 0 | n/a | _load_iif_slice |
| 1931 | 0 | n/a | _load_iit_slice |
| 1963 | 0 | n/a | _load_iift_slice |
| 1995 | 0 | n/a | _load_is_slice |
| 2021 | 0 | n/a | _load_isf_slice |
| 2047 | 0 | n/a | _load_ist_slice |
| 2079 | 0 | n/a | _load_isft_slice |
| 2110 | 1 | n/a | _scores |
| 2133 | 1000 | n/a | _mean_score |
| 2158 | 11 | n/a | _stat_summary |
| 2203 | 1 | n/a | _rewrite_metadata |
| 2239 | 2 | Yes | binMean |
| 2245 | 1 | Yes | binVariance |
| 2256 | 1 | Yes | binStdev |
| 2266 | 1 | n/a | BEGIN |
| 2269 | 13 | n/a | new |
| 2278 | 16 | n/a | type |
| 2283 | 0 | n/a | chr_stats |
| 2289 | 0 | n/a | chr_mean |
| 2295 | 0 | n/a | chr_stdev |
| 2301 | 0 | n/a | global_stats |
| 2307 | 0 | n/a | global_mean |
| 2313 | 0 | n/a | global_stdev |
| 2322 | 1 | n/a | BEGIN |
| 2325 | 1 | n/a | new |
| 2333 | 1 | n/a | scores |
| 2343 | 0 | n/a | features |
| 2356 | 1 | n/a | get_seq_stream |
| 2371 | 0 | n/a | slices |
| 2379 | 0 | n/a | coverage |
| 2386 | 0 | n/a | wiggle |
| 2393 | 0 | n/a | statistical_summary |
| 2401 | 1 | n/a | BEGIN |
| 2404 | 4 | n/a | new |
| 2484 | 10 | n/a | next_seq |
| 2497 | 0 | n/a | next_feature |
| 2502 | 6 | n/a | _next_region |
| 2543 | 2 | n/a | _next_wiggle |
| 2633 | 2 | n/a | _next_summary |
| 2661 | 1 | n/a | BEGIN |
| 2666 | 1 | n/a | new |
| 2676 | 1 | n/a | coverage |
| 2682 | 1 | n/a | wiggle |
| 2687 | 0 | n/a | gff3_string |
| 2703 | 0 | n/a | statistical_summary |
| 2736 | 0 | n/a | get_seq_stream |
| 2752 | 1 | n/a | BEGIN |
| 2755 | 1 | n/a | new |
| 2768 | 1 | n/a | statistical_summary |
| 2819 | 0 | n/a | score |
| 2828 | 0 | n/a | gff3_string |
| 2841 | 0 | n/a | get_seq_stream |