| line |
count |
pod |
subroutine |
|
24
|
15 |
n/a |
BEGIN |
|
25
|
15 |
n/a |
BEGIN |
|
26
|
15 |
n/a |
BEGIN |
|
27
|
15 |
n/a |
BEGIN |
|
28
|
15 |
n/a |
BEGIN |
|
29
|
15 |
n/a |
BEGIN |
|
30
|
15 |
n/a |
BEGIN |
|
31
|
15 |
n/a |
BEGIN |
|
32
|
15 |
n/a |
BEGIN |
|
33
|
15 |
n/a |
BEGIN |
|
34
|
15 |
n/a |
BEGIN |
|
35
|
15 |
n/a |
BEGIN |
|
37
|
15 |
n/a |
BEGIN |
|
59
|
15 |
Yes |
initialize |
|
80
|
0 |
No |
cut_sister |
|
99
|
0 |
No |
edge2tree |
|
156
|
0 |
No |
reorder_by_ref |
|
163
|
0 |
n/a |
_flip_if_not_in_top_clade |
|
197
|
0 |
No |
trim_tips |
|
230
|
0 |
No |
identify_nodes_to_trim_by_walk_from_root |
|
270
|
0 |
No |
cut_tree |
|
297
|
0 |
No |
identify_nodes_to_cut_by_walk_from_root |
|
312
|
0 |
No |
label_selected_nodes |
|
334
|
0 |
No |
rename_tips |
|
359
|
0 |
No |
write_tab_tree |
|
417
|
0 |
No |
assign_leaf_ycoord |
|
430
|
0 |
No |
assign_inode_ycoord |
|
441
|
0 |
No |
tips_to_root |
|
447
|
0 |
No |
distance_to_root |
|
455
|
0 |
No |
pars_binary |
|
500
|
0 |
n/a |
_fitch_parsimony |
|
534
|
0 |
n/a |
_intersect_or_union |
|
549
|
0 |
n/a |
_penny_parsimony |
|
568
|
0 |
n/a |
_is_informative |
|
584
|
0 |
n/a |
_consistency_index |
|
608
|
0 |
n/a |
_check_id |
|
617
|
0 |
No |
print_tree_shape |
|
650
|
0 |
No |
edge_length_abundance |
|
705
|
0 |
No |
swap_otus |
|
734
|
1 |
No |
getdistance |
|
740
|
0 |
No |
sister_pairs |
|
767
|
1 |
Yes |
countOTU |
|
780
|
0 |
Yes |
reroot |
|
803
|
0 |
No |
clean_tree |
|
814
|
0 |
No |
delete_otus |
|
822
|
0 |
n/a |
_get_otus |
|
828
|
0 |
n/a |
_remove_otus |
|
842
|
0 |
No |
multi2bi |
|
850
|
0 |
n/a |
_add_node |
|
872
|
2 |
No |
subset |
|
925
|
1 |
No |
print_leaves_lengths |
|
930
|
1 |
No |
getlca |
|
952
|
1 |
No |
label_nodes |
|
962
|
1 |
No |
listdistance |
|
994
|
1 |
Yes |
bin |
|
1015
|
1 |
No |
print_all_lengths |
|
1026
|
1 |
No |
random_tree |
|
1043
|
1 |
No |
depth_to_root |
|
1053
|
1 |
No |
alldesc |
|
1068
|
1 |
No |
walk |
|
1090
|
0 |
No |
walk_edge |
|
1116
|
0 |
No |
delete_low_boot_support |
|
1122
|
0 |
No |
delete_short_branch |
|
1128
|
0 |
No |
mid_point_root |
|
1166
|
0 |
n/a |
_get_all_parents |
|
1185
|
15 |
Yes |
write_out |
|
1231
|
0 |
n/a |
_remove_branch |
|
1252
|
0 |
n/a |
_remove_short_branch |
|
1268
|
6 |
n/a |
_name2node |
|
1281
|
1 |
n/a |
_each_leaf |
|
1290
|
0 |
n/a |
_wu |
|
1320
|
0 |
n/a |
_walk_up |
|
1327
|
0 |
No |
print_all_node_ids |
|
1336
|
1 |
n/a |
_treeheight |
|
1344
|
213 |
n/a |
_binrecursive |
|
1361
|
13 |
n/a |
_desclen |