|
20
|
0 |
29 |
unless &GetOptions(\%opts, "help|h", "man", "version|V", "aln-index|I=s", "avg-pid|a", "binary", "bin-inform", "bin-ref=s", "boot|b", "codon-view|c:20", "con-blocks|B:6", "concat|A", "consensus|C:50", "delete|d=s", "dna2pep|D", "gap-char=s", "gap-states", "gap-states2", "input|i=s", "length|l", "list-ids|L", "match|m", "no-flat|F", "no-gaps|g", "num-seq|n", "output|o=s", "pair-diff", "pair-diff-ref=s", "pep2dna|P=s", "permute-states|M", "phy-nonint", "pick|p=s", "random-slice=i", "ref-seq|r=s", "remove-third", "resample|R:i", "rm-col|E=s", "select-third", "shuffle-sites|S", "slice|s=s", "split-cdhit=s", "trim-ends", "uniq|u", "upper", "var-sites|v", "window|w:30") |