| line |
true |
false |
branch |
|
55
|
0 |
0 |
if (defined $fastq) { } |
|
|
0 |
0 |
elsif (defined $simple) { } |
|
56
|
0 |
0 |
if (defined $simple) |
|
78
|
0 |
0 |
if (defined $seed_filename and -e $seed_filename) |
|
106
|
0 |
0 |
unless (-e $config_filename) |
|
180
|
0 |
0 |
if ($run_scripts) |
|
208
|
0 |
0 |
if ($work_index >= $num_cpus) |
|
297
|
2 |
5 |
if (defined $seed_fh) |
|
321
|
13 |
21 |
unless (defined $cluster_id) |
|
330
|
31 |
3 |
if ($cluster_id <= $max_clusters) |
|
383
|
3 |
6 |
if ($number_of_sequences_in_cluster == 1) { } |
|
394
|
9 |
0 |
if (defined $$fh_href{$new_id}) { } |
|
400
|
0 |
0 |
if $VERBOSE |
|
439
|
3 |
6 |
if @seq_w_counts == 1 |
|
446
|
2 |
7 |
if ($num_seqs > $max_top_seqs) |
|
466
|
3 |
16 |
if ($is_single) |
|
474
|
2 |
7 |
if (@overage_seqs) |
|
504
|
22 |
36 |
if ($distance < $max_distance) |
|
518
|
10 |
72 |
unless defined $seq |
|
519
|
0 |
72 |
if $seq eq $EMPTY_STRING |
|
522
|
48 |
24 |
if (not exists $count_of{$seq}) { } |
|
548
|
10 |
0 |
if $type eq $SIMPLE_TYPE |
|
551
|
0 |
0 |
if $type ne $FASTQ_TYPE |
|
559
|
0 |
0 |
unless defined $line |
|
581
|
10 |
72 |
unless defined $line |