| line |
true |
false |
branch |
|
40
|
0 |
0 |
if ($rs or $default_profile{$name}) { }
|
|
46
|
0 |
0 |
unless ($type =~ /^(fastq|raw)$/u)
|
|
97
|
0 |
0 |
if &$skip()
|
|
105
|
0 |
0 |
if ($deepth != scalar @{$partil[$i];})
|
|
124
|
0 |
0 |
if ($num_lines == 0)
|
|
136
|
0 |
0 |
if ($type eq 'fastq') { }
|
|
141
|
0 |
0 |
if eof $fh
|
|
147
|
0 |
0 |
unless defined(my $entry = readline $fh)
|
|
154
|
0 |
0 |
unless ($stack[0] =~ /^\@/u and $stack[2] =~ /^\+/u)
|
|
165
|
0 |
0 |
unless defined(my $entry = readline $fh)
|
|
176
|
0 |
0 |
$num_left < 1000 ? :
|
|
184
|
0 |
0 |
if (&$do_pick())
|
|
185
|
0 |
0 |
if length $entry >= 10
|
|
186
|
0 |
0 |
if ($picks >= 10 and ++$acm % int($picks / 10) == 0)
|
|
189
|
0 |
0 |
if --$picks_left <= 0
|
|
193
|
0 |
0 |
if (scalar @quality == 0)
|
|
200
|
0 |
0 |
unless $fh->close
|
|
219
|
0 |
0 |
if ($default_profile{$quality_profile})
|
|
224
|
0 |
0 |
unless defined $rs
|
|
227
|
0 |
0 |
unless defined $compressed
|
|
246
|
0 |
0 |
unless ($rs or $default_profile{$quality_profile})
|
|
252
|
0 |
0 |
if ($rs and not $rs->is_user_provided or $default_profile{$quality_profile})
|
|
277
|
0 |
0 |
if ($entry) { }
|
|
305
|
0 |
0 |
$quality->is_single_molecule ? :
|
|
|
0 |
0 |
$quality->is_user_provided ? :
|