Subroutine Coverage
| blib/lib/App/Fasops/Common.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
51 |
54 |
94.4
|
| pod |
3 |
33 |
9.0
|
| line |
count |
pod |
subroutine |
|
2
|
26 |
n/a |
BEGIN |
|
3
|
26 |
n/a |
BEGIN |
|
4
|
26 |
n/a |
BEGIN |
|
6
|
26 |
n/a |
BEGIN |
|
8
|
26 |
n/a |
BEGIN |
|
9
|
26 |
n/a |
BEGIN |
|
10
|
26 |
n/a |
BEGIN |
|
11
|
26 |
n/a |
BEGIN |
|
12
|
26 |
n/a |
BEGIN |
|
13
|
26 |
n/a |
BEGIN |
|
14
|
26 |
n/a |
BEGIN |
|
15
|
26 |
n/a |
BEGIN |
|
17
|
26 |
n/a |
BEGIN |
|
18
|
26 |
n/a |
BEGIN |
|
21
|
24 |
No |
mean |
|
28
|
39914 |
No |
any |
|
36
|
42656 |
No |
all |
|
44
|
2426 |
No |
uniq |
|
51
|
12 |
No |
firstidx |
|
60
|
3 |
No |
read_replaces |
|
76
|
115 |
No |
parse_block |
|
106
|
10 |
No |
parse_block_array |
|
130
|
9 |
No |
parse_block_header |
|
154
|
6 |
No |
parse_axt_block |
|
195
|
4 |
No |
parse_maf_block |
|
233
|
10 |
No |
revcom |
|
242
|
15 |
No |
seq_length |
|
251
|
208 |
No |
indel_intspan |
|
285
|
24 |
No |
seq_intspan |
|
297
|
0 |
No |
align_seqs |
|
398
|
0 |
No |
align_seqs_quick |
|
453
|
10 |
No |
trim_pure_dash |
|
469
|
544 |
n/a |
__ANON__ |
|
494
|
11 |
No |
trim_outgroup |
|
544
|
6 |
No |
trim_complex_indel |
|
610
|
1 |
No |
read_fasta |
|
646
|
13 |
No |
calc_gc_ratio |
|
675
|
60 |
No |
pair_D |
|
712
|
7 |
No |
ref_pair_D |
|
757
|
11 |
No |
multi_seq_stat |
|
776
|
991 |
n/a |
__ANON__ |
|
778
|
936 |
n/a |
__ANON__ |
|
785
|
41 |
n/a |
__ANON__ |
|
814
|
40 |
No |
get_snps |
|
828
|
383322 |
n/a |
__ANON__ |
|
829
|
376606 |
n/a |
__ANON__ |
|
890
|
13 |
No |
polarize_snp |
|
948
|
27 |
No |
get_indels |
|
1042
|
3 |
No |
polarize_indel |
|
1150
|
8 |
Yes |
chr_to_align |
|
1176
|
734 |
Yes |
align_to_chr |
|
1224
|
9 |
Yes |
calc_ld |
|
1249
|
36 |
n/a |
__ANON__ |
|
1280
|
0 |
No |
poa_consensus |