| line | true | false | branch | 
 
| 45 | 1 | 3 | unless (@{$args;}) | 
 
| 52 | 0 | 3 | if lc $_ eq 'stdin' | 
 
| 53 | 1 | 2 | unless (Path::Tiny::path($_)->is_file) | 
 
| 58 | 0 | 2 | unless (exists $opt->{'outdir'}) | 
 
| 61 | 0 | 2 | if (-e $opt->{'outdir'}) | 
 
| 62 | 0 | 0 | if ($opt->{'rm'}) | 
 
| 67 | 0 | 2 | if (lc $opt->{'outdir'} ne 'stdout') | 
 
| 77 | 0 | 2 | if (lc $infile eq 'stdin') { } | 
 
| 86 | 2 | 54 | if $in_fh->eof and $content eq '' | 
 
| 88 | 54 | 0 | unless ($in_fh->eof) | 
 
| 91 | 6 | 48 | if ($line eq '' || $line =~ /^\s+$/ and $content ne '') { } | 
 
| 97 | 12 | 12 | if ($opt->{'nodash'}) | 
 
| 100 | 6 | 18 | if ($opt->{'rc'} and $info->{'strand'} ne '+') | 
 
| 106 | 24 | 0 | if (lc $opt->{'outdir'} eq 'stdout') { } |