| line | true | false | branch | 
 
| 49 | 1 | 1 | if (@{$args;} != 1) | 
 
| 56 | 0 | 1 | if lc $_ eq 'stdin' | 
 
| 57 | 1 | 0 | unless (Path::Tiny::path($_)->is_file) | 
 
| 62 | 0 | 0 | if (not exists $opt->{'outfile'}) | 
 
| 71 | 0 | 0 | if (lc $args->[0] eq 'stdin') { } | 
 
| 79 | 0 | 0 | if (lc $opt->{'outfile'} eq 'stdout') { } | 
 
| 89 | 0 | 0 | if $in_fh->eof and $content eq '' | 
 
| 91 | 0 | 0 | unless ($in_fh->eof) | 
 
| 94 | 0 | 0 | if ($line eq '' || $line =~ /^\s+$/ and $content ne '') { } | 
 
| 98 | 0 | 0 | if ($opt->{'parallel'} >= 2) { } | 
 
| 112 | 0 | 0 | if ($opt->{'parallel'} >= 2) | 
 
| 144 | 0 | 0 | if ($opt->{'outgroup'}) | 
 
| 150 | 0 | 0 | if ($opt->{'outgroup'}) | 
 
| 162 | 0 | 0 | if (defined $info_out{$opt->{'cname'}}{'name'}) { } |