| line |
true |
false |
branch |
|
38
|
1 |
7 |
if ($interval_length < $min_interval) { }
|
|
|
2 |
5 |
elsif ($interval_length < $sw_size) { }
|
|
|
2 |
3 |
elsif ($interval_length < $sw_size * 2) { }
|
|
62
|
1 |
1 |
if ($interval_length % 2)
|
|
141
|
2 |
1 |
if ($density % 2) { }
|
|
158
|
1 |
0 |
if ($remain_length % 2)
|
|
199
|
3 |
3 |
if ($sw_type eq 'R') { }
|
|
|
3 |
0 |
elsif ($sw_type eq 'L') { }
|
|
210
|
1 |
11 |
if $sw_start < 1
|
|
211
|
0 |
11 |
if $sw_end > $comparable_number
|
|
214
|
0 |
11 |
if ($sw_set_member_number < $sw_size)
|
|
225
|
6 |
5 |
if ($sw_type eq 'R') { }
|
|
|
5 |
0 |
elsif ($sw_type eq 'L') { }
|
|
259
|
2 |
2 |
if ($sw_type eq 'R') { }
|
|
|
2 |
0 |
elsif ($sw_type eq 'L') { }
|
|
270
|
1 |
7 |
if $sw_start < 1
|
|
271
|
0 |
7 |
if $sw_end > $comparable_number
|
|
274
|
0 |
7 |
if ($sw_set_member_number < $window0_size)
|
|
291
|
4 |
3 |
if ($sw_type eq 'R') { }
|
|
|
3 |
0 |
elsif ($sw_type eq 'L') { }
|
|
323
|
0 |
6 |
if $working_length < $sw_size
|
|
326
|
3 |
3 |
if ($sw_type eq 'r') { }
|
|
|
3 |
0 |
elsif ($sw_type eq 'l') { }
|
|
342
|
0 |
6 |
if ($sw_set_member_number < $sw_size)
|
|
354
|
3 |
3 |
if ($sw_type eq 'r') { }
|
|
|
3 |
0 |
elsif ($sw_type eq 'l') { }
|
|
386
|
0 |
6 |
if $working_length < $sw_size
|
|
389
|
3 |
3 |
if ($sw_type eq 'r') { }
|
|
|
3 |
0 |
elsif ($sw_type eq 'l') { }
|
|
405
|
0 |
6 |
if ($sw_set_member_number < $sw_size)
|
|
417
|
3 |
3 |
if ($sw_type eq 'r') { }
|
|
|
3 |
0 |
elsif ($sw_type eq 'l') { }
|
|
445
|
1 |
2 |
if ($internal_start < $internal_end) { }
|
|
|
2 |
0 |
elsif ($internal_start == $internal_end) { }
|
|
456
|
0 |
3 |
unless $window0_set
|
|
472
|
3 |
3 |
if ($sw_type eq 'R') { }
|
|
|
3 |
0 |
elsif ($sw_type eq 'L') { }
|
|
483
|
1 |
5 |
if $sw_start < 1
|
|
484
|
0 |
5 |
if $sw_end > $comparable_number
|
|
487
|
0 |
5 |
if ($sw_set_member_number < $sw_size)
|
|
498
|
3 |
2 |
if ($sw_type eq 'R') { }
|
|
|
2 |
0 |
elsif ($sw_type eq 'L') { }
|
|
520
|
4 |
1 |
if ($old_set->size == 1) { }
|
|
533
|
0 |
5 |
unless $midleft_parent_idx and $midright_parent_idx
|
|
539
|
0 |
5 |
if $new_left_idx < 1
|
|
541
|
0 |
5 |
if $new_right_idx > $parent_size
|
|
562
|
1 |
2 |
if ($internal_start < $internal_end) { }
|
|
|
2 |
0 |
elsif ($internal_start == $internal_end) { }
|
|
573
|
2 |
1 |
if ($original_set->size < $sw_size) { }
|
|
580
|
0 |
3 |
unless $window0_set
|
|
581
|
0 |
3 |
unless $window0_set->size
|
|
597
|
3 |
3 |
if ($sw_type eq 'R') { }
|
|
|
3 |
0 |
elsif ($sw_type eq 'L') { }
|
|
608
|
1 |
5 |
if $sw_start < 1
|
|
609
|
0 |
5 |
if $sw_end > $comparable_number
|
|
612
|
0 |
5 |
if ($sw_set_member_number < $sw_size)
|
|
623
|
3 |
2 |
if ($sw_type eq 'R') { }
|
|
|
2 |
0 |
elsif ($sw_type eq 'L') { }
|
|
649
|
2 |
1 |
if ($internal_start < $internal_end) { }
|
|
657
|
0 |
2 |
if $working_length < $sw_size
|
|
662
|
1 |
1 |
if ($strand eq '+') { }
|
|
|
1 |
0 |
elsif ($strand eq '-') { }
|
|
680
|
0 |
6 |
if ($sw_set_member_number < $sw_size)
|
|
692
|
5 |
1 |
if ($strand eq '+') { }
|
|
|
1 |
0 |
elsif ($strand eq '-') { }
|