| line |
true |
false |
branch |
|
40
|
1554 |
10703 |
if @_ > 0 |
|
52
|
6 |
0 |
$@ ? : |
|
84
|
107 |
391 |
if ($self->is_empty) |
|
93
|
205 |
392 |
$lower == $upper ? : |
|
138
|
21 |
3 |
if (@spans) { } |
|
157
|
125 |
3 |
if (@sets) { } |
|
168
|
2 |
17 |
if ($self->is_empty) |
|
177
|
6 |
14 |
$lower == $upper ? : |
|
181
|
17 |
0 |
if (@runlists) { } |
|
205
|
247 |
6157 |
$self->edge_size == 0 ? : |
|
244
|
84 |
100 |
unless $pos & 1 |
|
255
|
1 |
6 |
if $pos & 1 |
|
266
|
0 |
40155 |
if (scalar @ranges != 2) |
|
274
|
0 |
40155 |
if ($from > $to) |
|
280
|
9936 |
30219 |
if ($from_pos & 1) |
|
283
|
7291 |
32864 |
if ($to_pos & 1) |
|
297
|
0 |
31307 |
if (scalar(@ranges) % 2 == 1) |
|
325
|
6447 |
1673 |
if (ref $first eq 'AlignDB::IntSpan') { } |
|
|
815 |
858 |
elsif (&Scalar::Util::Numeric::isint($first)) { } |
|
329
|
41 |
774 |
if (scalar @_ > 0) { } |
|
351
|
41 |
5139 |
if ($self->is_empty) { } |
|
358
|
2536 |
2603 |
if ($edges_ref->[0] == $NEG_INF) { } |
|
365
|
2536 |
2603 |
if ($edges_ref->[-1] == $POS_INF) { } |
|
392
|
861 |
0 |
if (ref $first eq 'AlignDB::IntSpan') { } |
|
|
0 |
0 |
elsif (&Scalar::Util::Numeric::isint($first)) { } |
|
396
|
0 |
0 |
if (scalar @_ > 0) { } |
|
425
|
0 |
141 |
if $self->is_empty |
|
469
|
26 |
141 |
if $self->is_empty |
|
481
|
4 |
98 |
if $self->is_empty |
|
505
|
40 |
88 |
if ($self->edge_size != $supplied->edge_size) |
|
513
|
18 |
250 |
if ($edges_a[$i] != $edges_b[$i]) |
|
542
|
9 |
27 |
$result ? : |
|
551
|
9 |
27 |
$result ? : |
|
557
|
8 |
13 |
if ($index == 0 or abs $index > $self->cardinality) |
|
560
|
7 |
6 |
$index < 0 ? : |
|
577
|
3 |
6 |
if ($index > $element_before + $span_size) { } |
|
602
|
5 |
7 |
if ($index > $element_after + $span_size) { } |
|
627
|
8 |
8 |
if ($member >= $lower and $member <= $upper) { } |
|
645
|
2 |
9 |
if ($from < 1) |
|
668
|
45 |
30 |
if ($offset <= $span_size) { } |
|
678
|
11 |
45 |
unless @edges |
|
697
|
8 |
37 |
unless (defined $length) |
|
701
|
2 |
35 |
if ($length <= 0) |
|
711
|
28 |
26 |
if ($length <= $span_size) { } |
|
720
|
28 |
7 |
if (@$edges_ref) |
|
731
|
0 |
63 |
if ($self->is_empty) { } |
|
742
|
0 |
63 |
if ($self->is_empty) { } |
|
756
|
60 |
90 |
if (&$code_ref()) |
|
773
|
224 |
0 |
if (defined $element) |
|
811
|
9 |
3 |
$_ > $end ? : |
|
|
5 |
12 |
$_ < $start ? : |
|
825
|
5 |
1 |
if ($self->is_not_empty) |
|
837
|
1 |
13 |
if ($self->is_empty or $self->is_universal) { } |
|
846
|
13 |
0 |
if ($c_set->is_neg_inf) |
|
850
|
13 |
0 |
if ($c_set->is_pos_inf) |
|
870
|
34 |
4 |
if ($lower != $self->NEG_INF) |
|
873
|
34 |
4 |
if ($upper != $self->POS_INF) |
|
876
|
32 |
6 |
if $lower <= $upper |
|
914
|
8 |
0 |
if ($maxlength > 0) |
|
916
|
9 |
2 |
if ($hole->size <= $maxlength) |
|
934
|
0 |
28 |
unless $self->size and $supplied->size |
|
937
|
4 |
24 |
if $overlap |
|
944
|
9 |
20 |
$d1 < $d2 ? : |
|
945
|
27 |
2 |
if (not defined $min_d or $d < $min_d) |
|
960
|
4 |
7 |
if (ref $supplied eq 'AlignDB::IntSpan') { } |
|
|
7 |
0 |
elsif (&Scalar::Util::Numeric::isint($supplied)) { } |
|
981
|
5 |
2 |
if ($pos & 1) |
|
995
|
4 |
0 |
if ($self->overlap($supplied)) |
|
997
|
5 |
3 |
if $subset->overlap($supplied) |
|
1009
|
3 |
7 |
if (ref $supplied eq 'AlignDB::IntSpan') { } |
|
|
7 |
0 |
elsif (&Scalar::Util::Numeric::isint($supplied)) { } |
|
1022
|
2 |
17 |
if $s->overlap($ss) |
|
1024
|
14 |
3 |
if (not defined $min_d or $d <= $min_d) |
|
1025
|
2 |
12 |
if (defined $min_d and $d == $min_d) { } |
|
1043
|
5 |
8 |
if $index == 0 or abs $index > $self->span_size |
|
1047
|
1 |
7 |
$index < 0 ? : |
|
1077
|
117 |
747 |
if $runlist eq $self->EMPTY_STRING |
|
1082
|
199 |
966 |
if ($run =~ /^ (-?\d+) $/x) { } |
|
|
956 |
10 |
elsif ($run =~ /^ (-?\d+) - (-?\d+) $/x) { } |
|
1086
|
2 |
954 |
if $1 > $2 |
|
1102
|
688 |
4 |
if (defined $supplied and ref $supplied eq 'AlignDB::IntSpan') { } |
|
1126
|
33276 |
57637 |
if ($val < $edges_ref->[$mid]) { } |
|
|
49079 |
8558 |
elsif ($val > $edges_ref->[$mid]) { } |