| line |
true |
false |
branch |
|
26
|
1 |
2 |
if ($segment_size) { }
|
|
49
|
11 |
53 |
if $sliding_end > $comparable_number
|
|
74
|
0 |
48 |
if ($four_count == 0) { }
|
|
97
|
0 |
6 |
if ($segment_number < $window_size + $window_step)
|
|
114
|
5 |
1 |
$gc_mean <= 0.5 ? :
|
|
|
0 |
6 |
$gc_mean == 0 || $gc_mean == 1 ? :
|
|
118
|
0 |
6 |
$self->skip_mdcw ? :
|
|
135
|
0 |
2 |
unless $midleft_parent_idx and $midright_parent_idx
|
|
141
|
0 |
2 |
if $new_left_idx < 1
|
|
143
|
0 |
2 |
if $new_right_idx > $parent_size
|
|
159
|
0 |
2 |
unless $resize_set
|
|
173
|
0 |
66 |
unless @_
|
|
174
|
50 |
16 |
unless @_ > 1
|
|
180
|
0 |
6 |
unless @_
|
|
181
|
0 |
6 |
unless @_ > 1
|
|
188
|
0 |
6 |
unless @_
|
|
189
|
0 |
6 |
unless @_ > 1
|
|
196
|
0 |
6 |
if (@array <= 1)
|
|
230
|
924 |
276 |
unless $_ < $count
|
|
234
|
1 |
23 |
if (scalar @right_vicinal_windows == 0) { }
|
|
239
|
5 |
18 |
if ($windows->[$i]{'sw_gc'} >= &List::Util::max(@right_vicinal_windows))
|
|
242
|
3 |
20 |
if ($windows->[$i]{'sw_gc'} <= &List::Util::min(@right_vicinal_windows))
|
|
247
|
0 |
24 |
if ($right_low and $right_high) { }
|
|
|
5 |
19 |
elsif ($right_low) { }
|
|
|
3 |
16 |
elsif ($right_high) { }
|
|
269
|
924 |
276 |
if $_ < 0
|
|
273
|
1 |
23 |
if (scalar @left_vicinal_windows == 0) { }
|
|
278
|
7 |
16 |
if ($windows->[$i]{'sw_gc'} >= &List::Util::max(@left_vicinal_windows))
|
|
281
|
6 |
17 |
if ($windows->[$i]{'sw_gc'} <= &List::Util::min(@left_vicinal_windows))
|
|
286
|
2 |
22 |
if ($left_low and $left_high) { }
|
|
|
5 |
17 |
elsif ($left_low) { }
|
|
|
4 |
13 |
elsif ($left_high) { }
|
|
305
|
3 |
21 |
if ($left_flag eq 'H' and $right_flag eq 'H') { }
|
|
|
4 |
17 |
elsif ($left_flag eq 'L' and $right_flag eq 'L') { }
|
|
335
|
28 |
140 |
if ($flag eq 'T' or $flag eq 'C')
|
|
347
|
13 |
7 |
if ($i - 1 >= 0)
|
|
351
|
17 |
3 |
if ($i + 1 < scalar @extreme)
|
|
356
|
7 |
13 |
if ($wave eq 'T') { }
|
|
|
13 |
0 |
elsif ($wave eq 'C') { }
|
|
357
|
1 |
6 |
if ($wave eq $left_wave)
|
|
358
|
1 |
0 |
if ($gc <= $left_gc)
|
|
363
|
1 |
5 |
if ($wave eq $right_wave)
|
|
364
|
0 |
1 |
if ($gc < $right_gc)
|
|
371
|
3 |
10 |
if ($wave eq $left_wave)
|
|
372
|
3 |
0 |
if ($gc >= $left_gc)
|
|
377
|
3 |
7 |
if ($wave eq $right_wave)
|
|
378
|
0 |
3 |
if ($gc > $right_gc)
|
|
396
|
1 |
6 |
if ($i + 3 < scalar @extreme) { }
|
|
414
|
0 |
1 |
if (abs $gc1 - $gc2 < $fall_range)
|
|
415
|
0 |
0 |
if (&List::Util::max($gc1, $gc2) < &List::Util::max($gc, $gc3) and &List::Util::min($gc1, $gc2) > &List::Util::min($gc, $gc3))
|
|
432
|
2 |
5 |
if ($i + 2 < scalar @extreme) { }
|
|
446
|
0 |
2 |
if (abs $gc1 - $gc < $fall_range and abs $gc2 - $gc1 < $fall_range)
|
|
459
|
2 |
1 |
if ($i + 1 < scalar @extreme)
|
|
460
|
2 |
0 |
if ($extreme[$i + 1] - $extreme[$i] < $vicinal_number)
|
|
470
|
1 |
23 |
if ($flag eq 'T' or $flag eq 'C')
|
|
475
|
1 |
0 |
if (scalar @extreme == scalar @extreme2)
|