| line |
true |
false |
branch |
|
22
|
2 |
4 |
if ($spec_name eq 'align') { } |
|
26
|
0 |
9 |
unless $rv eq 'align' |
|
33
|
0 |
4 |
unless $rv eq $spec_name |
|
43
|
26 |
7 |
if (@_) { } |
|
49
|
4 |
29 |
if (exists $$cb{'select_align'}) |
|
52
|
6 |
6 |
unless (exists $$cb{$_}) |
|
66
|
6 |
6 |
if (@_) |
|
76
|
12 |
0 |
if (@_) |
|
86
|
3 |
0 |
if (@_) |
|
96
|
3 |
0 |
if (@_) |
|
111
|
27 |
6 |
if (not exists $$self{'gap_open_penalty'}) { } |
|
112
|
0 |
27 |
if (exists $$self{'gap_extend_penalty'}) |
|
116
|
3 |
24 |
unless (exists $$self{'gap_penalty'}) |
|
122
|
0 |
6 |
unless (exists $$self{'gap_extend_penalty'}) |
|
126
|
0 |
6 |
if ($$self{'gap_open_penalty'} >= $$self{'gap_extend_penalty'}) |
|
158
|
20 |
7 |
if (not $$self{'local'}) { } |
|
168
|
1042 |
83 |
$i < $m ? : |
|
183
|
20 |
7 |
if (not $$self{'local'}) { } |
|
220
|
2671 |
3524 |
if ($scores[$k] == $d) |
|
244
|
151 |
79 |
if ($a & $from_diag) |
|
245
|
0 |
151 |
unless $i > 0 and $j > 0 |
|
249
|
60 |
170 |
if ($a & $from_up) |
|
250
|
0 |
60 |
unless $i > 0 |
|
254
|
59 |
171 |
if ($a & $from_left) |
|
255
|
0 |
59 |
unless $j > 0 |
|
259
|
0 |
230 |
unless (@alt) |
|
265
|
197 |
33 |
if (@alt == 1) { } |
|
272
|
149 |
81 |
if ($move eq 'align') { } |
|
|
44 |
37 |
elsif ($move eq 'shift_a') { } |
|
|
37 |
0 |
elsif ($move eq 'shift_b') { } |
|
315
|
4 |
2 |
if (not $$self{'local'}) { } |
|
331
|
792 |
45 |
if ($i < $m) |
|
342
|
4 |
2 |
if (not $$self{'local'}) { } |
|
412
|
8 |
10 |
if ($score[$idx] == $res) |
|
424
|
64 |
68 |
if ($arrow & $from_diag) |
|
425
|
0 |
64 |
unless $i > 0 and $j > 0 |
|
429
|
49 |
83 |
if ($arrow & $from_up) |
|
430
|
0 |
49 |
unless $i > 0 |
|
434
|
45 |
87 |
if ($arrow & $from_left) |
|
435
|
0 |
45 |
unless $j > 0 |
|
439
|
0 |
132 |
unless (@alt) |
|
448
|
107 |
25 |
if (@alt == 1) { } |
|
455
|
64 |
68 |
if ($move eq 'align') { } |
|
|
40 |
28 |
elsif ($move eq 'shift_a') { } |
|
|
28 |
0 |
elsif ($move eq 'shift_b') { } |
|
460
|
2 |
62 |
if ($i == 0) { } |
|
|
2 |
60 |
elsif ($j == 0) { } |
|
470
|
77 |
103 |
if ($score[$idx] == $d) |
|
483
|
5 |
35 |
if ($$self{'local'} and $i == $m) { } |
|
510
|
22 |
46 |
if ($i == 0) { } |
|
|
0 |
46 |
elsif ($j == 0) { } |
|
520
|
53 |
85 |
if ($$base[$idx] + $$delta[$idx] == $to_score) |
|
537
|
48 |
76 |
if ($m eq 'align') { } |
|
|
32 |
44 |
elsif ($m eq 'shift_a') { } |
|
|
44 |
0 |
elsif ($m eq 'shift_b') { } |
|
550
|
4 |
54 |
if (exists $$cb{'select_align'}) { } |
|
552
|
0 |
4 |
unless (exists $$arg{$move}) |
|
558
|
54 |
10 |
if (exists $$arg{$m}) |
|
564
|
0 |
54 |
unless ($move) |
|
568
|
47 |
7 |
if (exists $$cb{$move}) |
|
569
|
37 |
10 |
if ($move eq 'align') { } |
|
583
|
324 |
104 |
if ($$next[0] == $$cur[0] - 1) { } |
|
584
|
215 |
109 |
if ($$next[1] == $$cur[1] - 1) { } |
|
585
|
155 |
60 |
if (exists $$cb{'align'}) |
|
591
|
0 |
109 |
if ($$next[1] != $$cur[1]) |
|
595
|
59 |
50 |
if (exists $$cb{'shift_b'}) |
|
602
|
0 |
104 |
if ($$next[0] != $$cur[0]) |
|
606
|
0 |
104 |
if ($$next[1] != $$cur[1] - 1) |
|
610
|
70 |
34 |
if (exists $$cb{'shift_a'}) |