| blib/lib/Ace/Sequence.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 0 | 85 | 0.0 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 72 | 0 | 0 | 0 | $seq and $db |
| 76 | 0 | 0 | 0 | defined $start and not defined $offset |
| 79 | 0 | 0 | 0 | defined $end and not defined $length |
| 162 | 0 | 0 | 0 | ref $refseq and ref $refseq eq 'ARRAY' |
| 167 | 0 | 0 | 0 | ref $refseq and $refseq->can('smapped') |
| 253 | 0 | 0 | 0 | $abs and $self->refseq ne $self->parent |
| 287 | 0 | 0 | 0 | ref $arg and $arg->isa('Ace::Sequence') |
| 631 | 0 | 0 | 0 | $automerge and lc $type eq 'transcript' |
| 0 | 0 | 0 | $automerge and lc $type eq 'clone' | |
| 686 | 0 | 0 | 0 | !m[^(?:\#|//)] && &$filter($_) |
| 736 | 0 | 0 | 0 | ref $features eq 'ARRAY' and @$features |
| line | l | !l | condition |
|---|---|---|---|
| 97 | 0 | 0 | $offset ||= 0 |
| 120 | 0 | 0 | eval { do { $self->refseq($refseq) } } or return |
| 444 | 0 | 0 | $clones{$_} ||= {} |
| 461 | 0 | 0 | $clones{$clone}{'start'} || -99999999 |
| 462 | 0 | 0 | $clones{$clone}{'end'} || 99999999 |
| 595 | 0 | 0 | $tl_start ||= 0 |
| 596 | 0 | 0 | $tl_end ||= 0 |
| 617 | 0 | 0 | $parent ||= '' |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 72 | 0 | 0 | 0 | ref $seq or $seq and $db |
| 107 | 0 | 0 | 0 | $length || $p_length |
| 229 | 0 | 0 | 0 | $_[0]{'db'} ||= $_[0]->source->db |
| 255 | 0 | 0 | 0 | $r_strand < 0 or $$self{'strand'} < 0 |
| 0 | 0 | 0 | $r_strand < 0 or $$self{'strand'} < 0 or $$self{'length'} < 0 | |
| 288 | 0 | 0 | 0 | $self->parent cmp $arg->parent || $self->start <=> $arg->start |
| 401 | 0 | 0 | 0 | $transcripts{$transcript}{'base'} ||= $feature |
| 518 | 0 | 0 | 0 | $ref_source ||= $source |
| 519 | 0 | 0 | 0 | $ref_strand ||= $strand |
| 575 | 0 | 0 | 0 | $obj->get('S_Parent', 2) || $obj->get('Source', 1) |
| 602 | 0 | 0 | 0 | $length ||= CORE::abs($tl_end - $tl_start) + 1 |
| 704 | 0 | 0 | 0 | shift() || $self->db |