| line |
true |
false |
branch |
|
31
|
2 |
6 |
unless open FH, '<', "$obofile" |
|
|
8 |
0 |
if ($obofile =~ /.obo$/i) |
|
34
|
12 |
263 |
if $_ =~ /^\s*$/ |
|
35
|
5 |
258 |
if ($_ =~ /^namespace:\s+(\D+)/) { } |
|
|
6 |
252 |
elsif ($_ =~ /^name:\s+(.+)/) { } |
|
|
6 |
246 |
elsif ($_ =~ /^id:\s+(\D+\d+)/) { } |
|
|
6 |
240 |
elsif ($_ =~ /^is_a:\s+(\D+\d+)/) { } |
|
|
6 |
234 |
elsif ($_ =~ /^relationship: part_of\s+(\D+\d+)/) { } |
|
44
|
5 |
1 |
if (defined $namespace) { } |
|
52
|
5 |
1 |
if (defined $namespace) { } |
|
66
|
1 |
5 |
unless open FH, '<', $edgesfile |
|
68
|
1 |
10 |
if $_ =~ /^[!,#]|^\s*$/ |
|
71
|
8 |
2 |
if ($vals[0] eq $namespace) |
|
74
|
1 |
4 |
unless (exists $checker{$namespace}) |
|
83
|
1 |
4 |
unless open FH, '<', $edgesfile |
|
100
|
0 |
5 |
unless $deg{$b} <=> $deg{$a} |
|
105
|
3 |
1 |
if ($len % 2) { } |
|
127
|
2 |
8 |
if ($chdORpar ne 'parents' and $chdORpar ne 'children') |
|
128
|
2 |
6 |
unless open FH, '<', $edgesfile |
|
132
|
6 |
6 |
if ($chdORpar eq 'parents') { } |
|
149
|
1 |
4 |
unless open FH, '<', "$termsfile" |
|
152
|
2 |
12 |
if $_ =~ /^\s*$/ |
|
159
|
1 |
3 |
unless open FH, '<', "$obofile" |
|
|
4 |
0 |
if ($obofile =~ /.obo$/i) |
|
161
|
276 |
81 |
unless 1 .. /\[Term\]/ |
|
162
|
3 |
78 |
if /^\[Term\]/ |
|
170
|
40 |
912 |
if (/^id:\s+($oboterm)/ .. /^$/ || eof FH) |
|
177
|
1 |
2 |
unless (defined $res) |
|
188
|
1 |
1 |
unless open FH, '<:gzip', $annfile |
|
|
1 |
3 |
unless open FH, '<', "$annfile" |
|
|
2 |
4 |
if ($annfile =~ /.gz$/i) { } |
|
190
|
3 |
24 |
if $_ =~ /^[!,#]|^\s*$/ |
|
214
|
2 |
7 |
unless open FH, '<', "$obofile" |
|
|
9 |
0 |
if ($obofile =~ /.obo$/i) |
|
217
|
14 |
308 |
if $_ =~ /^\s*$/ |
|
218
|
7 |
301 |
if ($_ =~ /^id:\s+(\D+\d+)/) |
|
219
|
49 |
259 |
if ($_ =~ /^alt_id:\s+(\D+\d+)/) |
|
224
|
1 |
1 |
unless open FH, '<:gzip', $annfile |
|
|
1 |
4 |
unless open FH, '<', "$annfile" |
|
|
2 |
5 |
if ($annfile =~ /.gz$/i) { } |
|
227
|
2 |
26 |
if ($_ =~ /^[!,#]|^\s*$/) |
|
228
|
2 |
26 |
if $_ =~ /^[!,#]|^\s*$/ |
|
237
|
8 |
27 |
if ($oldclass{$k}) { } |
|
245
|
8 |
27 |
if ($tmp ne 'unseen') |
|
250
|
0 |
1 |
unless open FH, '<:gzip', $annfile |
|
|
0 |
4 |
unless open FH, '<', "$annfile" |
|
|
1 |
4 |
if ($annfile =~ /.gz$/i) { } |
|
253
|
2 |
26 |
if $_ =~ /^[!,#]|^\s*$/ |
|
256
|
16 |
10 |
if ($old2new{$oboterm}) { } |
|
265
|
1 |
4 |
if (defined $header) |
|
268
|
4 |
1 |
if (defined $pair) |