Branch Coverage

GO/Model/Graph.pm

Criterion	Covered	Total	%
branch	86	304	28.2

line	true	false	branch
184	15	13	unless $self->apph
198	0	0	if ($val_ref =~ /HASH/i) { }
	0	0	elsif ($val_ref =~ /ARRAY/i) { }
237	0	8	ref $arg ? :
239	1	7	if ($$h{'acc'})
263	0	0	unless (ref $sub)
266	0	0	if (!ref($sub) eq 'CODE')
299	0	5	unless (ref $sub)
302	0	5	if (!ref($sub) eq 'CODE')
311	4	338	if (&$sub($ni))
338	0	5	unless (ref $constr)
347	0	5	if ($v =~ m[^/.*/$]) { }
354	0	5	if ('GO::Model::Term'->new->can($_ . '_list')) { }
417	0	1	if ($partial)
424	4	1	if $rel
427	0	5	if $done{$t->acc}
457	12	0	if (not $order) { }
489	0	5216	if (ref $acc)
490	0	0	if (ref $acc eq 'HASH') { }
522	0	1	if (!@terms > 1)
569	2	5	if ($$self{'_top_nodes'})
578	302	10	if ($node)
582	8	282	unless (@parent_nodes)
605	0	0	if ($$self{'_leaf_nodes'})
611	0	0	unless (@$child_rels)
660	0	0	if @_
685	0	0	if @_
701	0	0	unless $self->focus_nodes
	0	0	if (grep {$_->acc eq $term->acc;} @{[] unless $self->focus_nodes;})
722	0	0	if (not $self->is_focus_node($term))
792	4	8	if (not @$parent_rels) { }
799	0	10	if (not $parent) { }
850	0	0	if ($term) { }
902	0	0	if (ref $acc)
903	0	0	if (ref $acc eq 'HASH')
908	0	0	unless $self->get_child_terms($acc)
909	0	0	if (@tl)
920	0	0	unless (defined $$self{'n_children_h'}{$acc})
923	0	0	unless $term
949	0	0	if (ref $acc)
950	0	0	if (ref $acc eq 'HASH')
955	0	0	unless (defined $$self{'n_parents_h'}{$acc})
958	0	0	unless $term
985	829	1014	unless ($term)
1008	829	0	if ref $acc
1030	728	286	unless $self->association_list($acc)
1031	0	872	unless $self->deep_association_list($_->acc)
1032	0	1014	unless $self->get_child_terms($acc)
1059	0	0	unless ($ph{$gp->xref->as_str})
1090	16	70	unless ($ph{$gp->xref->as_str})
1164	0	614	if (ref $acc and $acc->isa('GO::Model::Term'))
1198	0	1618	if (ref $acc and $acc->isa('GO::Model::Term'))
1483	0	13	if (ref $acc and $acc->isa('GO::Model::Term'))
1487	6	7	$relkind eq 'child' ? :
1491	0	13	if ($type)
1506	0	13	if ($refl)
1530	1	1129	if (ref $acc and $acc->isa('GO::Model::Term'))
1534	1029	101	$relkind eq 'child' ? :
1538	1	1129	if ($type)
1547	994	18	if ($t)
1685	0	0	if (ref $node) { }
1686	0	0	if (ref $node eq 'ARRAY') { }
	0	0	elsif ($node->isa('GO::Model::Term')) { }
1701	0	0	unless ($n->acc eq $acc)
1705	0	0	$if_no_parent_to_delete ? :
1728	0	0	if (not $p_acc or $par_acc and $par_acc eq $p_acc) { }
1736	0	0	unless $other_p
1745	0	0	unless ($other_p)
1751	0	0	unless $other_p
1754	0	0	unless ($other_p)
1769	0	0	unless ($path and $path->term_list)
1772	0	0	if ($path->length < 2)
1799	3	94	unless (@$ps)
1825	0	0	unless ($prod_index[$p->id])
1866	0	0	if (not defined $h{$k} or $h{$k} > $rh{$k})
1891	0	0	if ($self->get_term($t->acc)) { }
1897	0	0	unless $g2->focus_nodes
1912	0	0	unless $self->get_parent_relationships($term->acc)
1919	0	0	if ($_->is_inheritance) { }
1938	0	0	@parents ? :
	0	0	@lisp_isa ? :
	0	0	@lisp_partof ? :
1951	0	0	if (ref $$arr[$i]) { }
1970	0	0	if $done{$term->acc}
1978	0	0	unless ($include and $$include{'-assocs'})
2008	0	0	if ($format eq 'png') { }
	0	0	elsif ($format eq 'go_ont') { }
2082	0	1420	unless (ref $term)
2085	6	1414	if (ref $term eq 'HASH')
2090	0	1420	unless $acc
2127	1	742	if (ref $rel eq 'HASH')
2130	5	738	if (UNIVERSAL::isa($rel, 'GO::Model::Relationship')) { }
2134	1	737	if (ref $from_id)
2135	0	1	if (UNIVERSAL::isa($from_id, 'GO::Model::Term'))
2137	0	0	if ($term1->acc) { }
2145	0	738	if (ref $to_id)
2146	0	0	if (UNIVERSAL::isa($to_id, 'GO::Model::Term'))
2148	0	0	if ($term2->acc) { }
2156	0	738	unless $from_id
2157	0	738	unless $to_id
2170	0	743	unless $rel->acc1
2171	0	743	unless $rel->acc2
2207	311	432	unless ($$self{'child_relationships_h'}{$rel->acc1})
2213	632	111	unless ($$self{'parent_relationships_h'}{$rel->acc2})
2225	0	0	if (ref $acc)
2230	0	0	unless $_->property_list
2236	0	0	unless $_->property_list
2243	0	0	if @_
2244	0	0	unless $$self{'_cross_product_index'}
2252	0	0	if (ref $xp_acc) { }
2281	0	0	if ($xp->equals($curr_xp))
2296	0	0	unless $t->type eq $tt
2301	0	0	if $xp
2310	0	0	unless ($$self{'trailing_edges'})
2313	0	0	unless ($$self{'trailing_edges'}{$acc})
2347	0	0	if @isects == 1
2348	0	0	unless @isects > 1
2350	0	0	if (@isects)
2357	0	0	if ($rel ne 'is_a') { }
2420	0	0	unless ($self->is_leaf_node($term->acc))
2458	1	0	unless $opts
2459	1	0	unless $it
2461	0	1	if ($$opts{'isa_only'})
2464	1	0	if ($fmt eq 'gotext') { }
	0	0	elsif ($fmt eq 'tree') { }
	0	0	elsif ($fmt eq 'triples') { }
2468	0	5	if $term->is_relationship_type
2471	4	1	$ni->parent_rel ? :
2482	4	1	if ($parent_rel)
2484	0	4	if ($disp_filter)
2486	0	0	unless ref $disp_filter
2496	0	0	unless $n
2503	0	5	if ($$opts{'show_counts'})
2505	0	0	if ($$opts{'grouped_by_taxid'})
2515	0	0	if ($sp and $sp->binomial)
2523	0	5	if ($show_assocs and $self->is_focus_node($term))
2543	0	0	$ni->parent_rel ? :
2560	0	0	unless $p
2573	0	0	if $term->is_relationship_type
2576	0	0	$self->is_focus_node($term) ? :
2578	0	0	$ni->parent_rel ? :
2586	0	0	if ($show_assocs and $self->is_focus_node($term))
2657	0	0	unless grep {$_->public_acc eq $term->public_acc;} @$terms
2703	0	0	unless not $rel or lc $rel->type eq 'is_a'
2709	0	0	unless ($t2)
2714	0	0	unless ($t2)
2725	0	0	if ($rel)
2726	0	0	if $rel->acc1
2732	0	0	if ($rel)
2734	0	0	if ($np)
2765	0	0	unless $opts
2766	0	0	unless $subg