| line |
true |
false |
branch |
|
80
|
0 |
0 |
if (defined $header and $header =~ s/^($UNBOUND_FASTA_SEPARATOR){0,1}(.*)/$UNBOUND_FASTA_SEPARATOR$2/ and defined $data_rec and defined($identifier = &_headerToIdentifier($header)) and &isValidFASTAdata($data_rec) != 0) |
|
117
|
0 |
0 |
if (defined $other_obj and $self->toString eq $other_obj->toString) { } |
|
140
|
0 |
0 |
unless (&isValidFASTAheader($header)) |
|
232
|
0 |
0 |
if (defined $NA_strand and $validData = &_isNucleotideData($NA_strand) and $validData == 1) { } |
|
237
|
0 |
0 |
if (not defined $NA_strand =~ tr/\-.A-DGHKMNR-Ya-dghkmnr-y/\-.TVGHCDMKNYSAABWXRtvghcdmknysaabwxr/) { } |
|
|
0 |
0 |
elsif (not defined($rev_compl_str = reverse($NA_strand))) { } |
|
248
|
0 |
0 |
defined $error_condition ? : |
|
268
|
0 |
0 |
if (defined $NA_strand and $validData = &_isNucleotideData($NA_strand) and $validData == 1) { } |
|
273
|
0 |
0 |
if (not defined $NA_strand =~ tr/\-.A-DGHKMNR-Ya-dghkmnr-y/\-.TVGHCDMKNYSAABWXRtvghcdmknysaabwxr/) { } |
|
|
0 |
0 |
elsif (not defined($rev_compl_str = reverse($NA_strand))) { } |
|
284
|
0 |
0 |
defined $error_condition ? : |
|
312
|
0 |
0 |
if (defined $data_str and defined $startpos and defined $length and abs $startpos < $strlen and abs $length <= $strlen) { } |
|
|
0 |
0 |
elsif (defined $data_str and defined $startpos and not defined $length and abs $startpos < $strlen) { } |
|
343
|
0 |
0 |
if (defined $data_str and $data_str =~ /[-]+/) { } |
|
|
0 |
0 |
elsif (not defined $data_str) { } |