| line |
!l |
l&&!r |
l&&r |
condition |
|
120
|
0 |
0 |
0 |
scalar @method_args > 0 and ref($method_args[0]) =~ /foundation/i |
|
132
|
0 |
0 |
0 |
scalar @method_args > 0 and ref($method_args[0]) =~ /array/i |
|
144
|
0 |
0 |
0 |
scalar @method_args > 0 and not ref $method_args[0] |
|
164
|
0 |
0 |
0 |
defined $self->{'db_file_name'} and not defined $self->open($self->{'db_file_name'}, 'r') |
|
194
|
0 |
0 |
0 |
defined $open_flags and $open_flags =~ /^r$/i |
|
208
|
0 |
0 |
0 |
defined $db_file_name && ($self->{'db_file_name'} = $db_file_name) && defined $self->{'db_file_name'} && defined($self->{'db_handle'} = 'IO::File'->new($self->{'db_file_name'}, $open_flags)) |
|
|
0 |
0 |
0 |
defined $self->{'db_file_name'} and defined $self->{'db_handle'} |
|
|
0 |
0 |
0 |
defined $self->{'db_file_name'} and defined $self->{'db_handle'} and $self->_parseDBfile == 0 |
|
301
|
0 |
0 |
0 |
defined $active_num and $active_num =~ /^\d+$/ || $active_num == -1 |
|
|
0 |
0 |
0 |
defined $active_num and $active_num =~ /^\d+$/ || $active_num == -1 and $active_num < $self->count |
|
360
|
0 |
0 |
0 |
defined $self->{'active_record'} and $self->{'active_record'} >= -1 |
|
|
0 |
0 |
0 |
defined $self->{'active_record'} and $self->{'active_record'} >= -1 and $self->{'active_record'} < $self->count - 1 |
|
393
|
0 |
0 |
0 |
defined $seek_result and $seek_result == 1 |
|
419
|
0 |
0 |
0 |
defined $identifier and exists $self->{'identifier_to_number_hash'}{$identifier} |
|
457
|
0 |
0 |
0 |
defined $self->{'active_record'} and $self->{'active_record'} > -1 |
|
|
0 |
0 |
0 |
defined $self->{'active_record'} and $self->{'active_record'} > -1 and $self->{'active_record'} < $self->count |
|
|
0 |
0 |
0 |
defined $self->{'active_record'} and $self->{'active_record'} > -1 and $self->{'active_record'} < $self->count and defined $db_handle |
|
|
0 |
0 |
0 |
defined $self->{'active_record'} and $self->{'active_record'} > -1 and $self->{'active_record'} < $self->count and defined $db_handle and defined($pos_str = $self->{'number_to_fp_array'}{$self->{'active_record'}}) |
|
468
|
0 |
0 |
0 |
defined $pos_arr[0] and defined $db_handle->seek($pos_arr[0], 0) |
|
|
0 |
0 |
0 |
defined $pos_arr[0] and defined $db_handle->seek($pos_arr[0], 0) and defined $pos_arr[1] |
|
|
0 |
0 |
0 |
defined $pos_arr[0] and defined $db_handle->seek($pos_arr[0], 0) and defined $pos_arr[1] and defined read($db_handle, $record, $pos_arr[1] - $pos_arr[0] + 1) |
|
560
|
0 |
0 |
0 |
defined $db_handle and defined(my $line = readline $db_handle) |
|
|
0 |
0 |
0 |
defined $db_handle and defined(my $line = readline $db_handle) and ++$line_number |
|
569
|
0 |
0 |
0 |
defined $record_identifier and not $record_identifier =~ // |
|
|
0 |
0 |
0 |
defined $record_identifier and not $record_identifier =~ // and &isValidFASTAdata($line) != 0 |
|
629
|
0 |
0 |
0 |
defined $line_number and $line_number > 1 |
|
634
|
0 |
0 |
0 |
defined $pos1 and defined $string |
|
703
|
0 |
0 |
0 |
defined $record_identifier and not $record_identifier =~ // |
|
733
|
0 |
0 |
0 |
defined $pos1 and defined $string |
|
774
|
0 |
0 |
0 |
defined $active_num and $active_num < $self->{'active_record'} |
|
|
0 |
0 |
0 |
defined $active_num and $active_num == $self->{'active_record'} |
|
822
|
0 |
0 |
0 |
defined $message and defined $tf_level |
|
|
0 |
0 |
0 |
defined $message and defined $tf_level and defined $log_facility |
|
835
|
0 |
0 |
0 |
defined $self->{'error_ref'} and $log_facility == $USR_ERR |