| line |
count |
pod |
subroutine |
|
20
|
9 |
n/a |
BEGIN |
|
21
|
9 |
n/a |
BEGIN |
|
22
|
9 |
n/a |
BEGIN |
|
24
|
9 |
n/a |
BEGIN |
|
26
|
9 |
n/a |
BEGIN |
|
28
|
9 |
n/a |
BEGIN |
|
29
|
9 |
n/a |
BEGIN |
|
30
|
9 |
n/a |
BEGIN |
|
31
|
9 |
n/a |
BEGIN |
|
55
|
9 |
n/a |
BEGIN |
|
155
|
0 |
No |
run |
|
414
|
0 |
No |
validate_input |
|
541
|
11 |
No |
analyze_cnv_data |
|
683
|
0 |
n/a |
__ANON__ |
|
778
|
7 |
No |
check_for_overlaps |
|
922
|
10 |
No |
analyze_trans_data |
|
1084
|
0 |
n/a |
__ANON__ |
|
1237
|
0 |
No |
analyze_insertion_data |
|
1440
|
0 |
No |
analyze_loh_data |
|
1604
|
2 |
No |
calculate_genome_localization |
|
1643
|
9 |
n/a |
BEGIN |
|
1689
|
2 |
No |
calculate_chromosome_localization |
|
2283
|
1 |
No |
check_copy_number_count |
|
2296
|
9 |
n/a |
BEGIN |
|
2331
|
1 |
No |
check_copy_number_switches |
|
2347
|
9 |
n/a |
BEGIN |
|
2389
|
1 |
No |
calculate_interchromosomal_translocation_rate |
|
2402
|
9 |
n/a |
BEGIN |
|
2459
|
0 |
No |
analyze_suspect_regions |
|
2538
|
9 |
n/a |
BEGIN |
|
2623
|
9 |
n/a |
BEGIN |
|
2637
|
9 |
n/a |
BEGIN |
|
2711
|
1 |
No |
analyze_likely_regions |
|
2764
|
9 |
n/a |
BEGIN |
|
2820
|
0 |
No |
calculate_score |
|
2901
|
0 |
No |
calculate_copy_number_scores |
|
3025
|
0 |
No |
calculate_genome_localization_score |
|
3104
|
13 |
No |
calculate_region_mutation_density_score |
|
3210
|
0 |
No |
calculate_translocation_score |
|
3361
|
9 |
n/a |
BEGIN |
|
3468
|
0 |
No |
calculate_insertion_breakpoint_score |
|
3514
|
9 |
n/a |
BEGIN |
|
3565
|
0 |
No |
calculate_loh_score |
|
3606
|
9 |
n/a |
BEGIN |
|
3664
|
9 |
n/a |
BEGIN |
|
3786
|
11 |
No |
standard_deviation_and_mean |
|
3856
|
0 |
No |
next_arg |
|
3867
|
0 |
No |
man_text |
|
3891
|
0 |
No |
usage |
|
3926
|
0 |
No |
initialize_genome_hash |
|
3965
|
8 |
No |
load_config_file |