| line |
!l |
l&&!r |
l&&r |
condition |
|
481
|
0 |
2 |
3 |
defined $id and defined $self->{'TERMS'}{$id} |
|
511
|
0 |
1 |
1 |
defined $id and defined $self->{'INSTANCES'}{$id} |
|
536
|
0 |
0 |
56 |
defined $id and defined $self->{'RELATIONSHIPS'}{$id} |
|
563
|
1 |
117 |
6704 |
defined $term && $self->{'TERMS_SET'}->contains($term) |
|
577
|
0 |
3 |
18 |
defined $instance && defined $self->{'INSTANCES'}{$instance->id} |
|
593
|
0 |
10 |
241 |
defined $term_id && defined $self->{'TERMS'}{$term_id} |
|
609
|
0 |
6 |
3 |
defined $instance_id && defined $self->{'INSTANCES'}{$instance_id} |
|
625
|
0 |
8 |
268 |
defined $relationship_type && defined $self->{'RELATIONSHIP_TYPES'}{$relationship_type->id} |
|
639
|
0 |
99 |
3574 |
defined $relationship_type_id && defined $self->{'RELATIONSHIP_TYPES'}{$relationship_type_id} |
|
653
|
0 |
579 |
862 |
defined $id && defined $self->{'RELATIONSHIPS'}{$id} |
|
1006
|
0 |
0 |
3 |
$term and $new_term_id |
|
1057
|
0 |
0 |
2 |
$instance and $new_instance_id |
|
1104
|
0 |
881 |
12 |
defined $term->name and $term->name eq $name |
|
1125
|
0 |
6 |
4 |
defined $instance->name and $instance->name eq $name |
|
1149
|
0 |
20 |
0 |
defined $t_name and lc $t_name eq $name_or_synonym |
|
1155
|
15 |
3 |
2 |
$scope eq 'ANY' and $s_text eq $name_or_synonym |
|
|
12 |
3 |
3 |
$syn->scope eq $scope and $s_text eq $name_or_synonym |
|
1183
|
0 |
20 |
0 |
defined $t_name and lc $t_name eq $name_or_synonym |
|
1189
|
15 |
3 |
2 |
$scope eq 'ANY' and $s_text eq $name_or_synonym |
|
|
12 |
3 |
3 |
$syn->scope eq $scope and $s_text eq $name_or_synonym |
|
1220
|
0 |
95 |
23 |
defined $term->name and lc($term->name) =~ /$name/ |
|
1247
|
0 |
19 |
6 |
defined $instance->name and lc($instance->name) =~ /$name/ |
|
1274
|
0 |
28 |
12 |
defined $relationship_type->name and lc($relationship_type->name) =~ /$name/ |
|
1294
|
0 |
13 |
12 |
defined $rel_type->name and lc $rel_type->name eq $name |
|
1329
|
62 |
0 |
3389 |
eval {
do {
$target_element->isa('OBO::Core::Term')
}
} and eval {
do {
$source_element->isa('OBO::Core::Term')
}
} |
|
|
0 |
0 |
62 |
eval {
do {
$target_element->isa('OBO::Core::RelationshipType')
}
} and eval {
do {
$source_element->isa('OBO::Core::RelationshipType')
}
} |
|
|
0 |
0 |
0 |
eval {
do {
$target_element->isa('OBO::Core::Term')
}
} and eval {
do {
$source_element->isa('OBO::Core::Instance')
}
} |
|
|
0 |
0 |
0 |
eval {
do {
$target_element->isa('OBO::Core::Instance')
}
} and eval {
do {
$source_element->isa('OBO::Core::Instance')
}
} |
|
1392
|
0 |
0 |
222 |
$tail and $head |
|
1477
|
0 |
0 |
93718 |
$element and $relationship_type |
|
1504
|
0 |
0 |
10 |
$element and $relationship_type |
|
2368
|
0 |
2 |
0 |
$base and not $base =~ /^http/ |
|
2573
|
857 |
427 |
13667 |
$rt_name and $rt_name ne 'is_a' |
|
2575
|
13667 |
0 |
0 |
$rdf_tc and $rt_name_clean eq 'part_of' |
|
4224
|
0 |
16 |
0 |
$error_file_handle eq $stderr_fh and not -w $error_file_handle |
|
4601
|
0 |
0 |
3 |
$db and $acc |
|
4605
|
0 |
3 |
3 |
$xref->db eq $db and $xref->acc eq $acc |
|
4624
|
0 |
0 |
3 |
$db and $acc |
|
4628
|
0 |
3 |
3 |
$xref->db eq $db and $xref->acc eq $acc |
|
4706
|
0 |
4516 |
0 |
defined $banned_sou and $banned_sou > $hijos_sou |
|
4714
|
578 |
3938 |
6673 |
$w > -1 and $bk_ww = $bk[$w], $hijos{$bk_ww} == 1 || defined $drop{$bk_ww} && $hijos{$bk_ww} == $drop{$bk_ww} || defined $banned{$bk_ww} && $banned{$bk_ww} == $hijos{$bk_ww} |
|
4734
|
0 |
6095 |
0 |
defined $banned_bk_w and $banned_bk_w > $hijos_bk_w |
|
4772
|
1 |
101 |
0 |
defined $v and $self->has_term_id($v) |
|
4833
|
0 |
159 |
0 |
defined $banned_sou and $banned_sou > $hijos_sou |
|
4841
|
70 |
89 |
376 |
$w > -1 and $bk_ww = $bk[$w], $hijos{$bk_ww} == 1 || defined $drop{$bk_ww} && $hijos{$bk_ww} == $drop{$bk_ww} || defined $banned{$bk_ww} && $banned{$bk_ww} == $hijos{$bk_ww} |
|
4861
|
0 |
306 |
0 |
defined $banned_bk_w and $banned_bk_w > $hijos_bk_w |
|
4899
|
1 |
140 |
0 |
defined $v and $self->has_term_id($v) |
|
4901
|
1 |
135 |
0 |
defined $rel and $self->has_relationship_type_id($rel) |
|
4964
|
0 |
267 |
0 |
defined $banned_sou and $banned_sou > $hijos_sou |
|
4972
|
68 |
199 |
162 |
$w > -1 and $bk_ww = $bk[$w], $hijos{$bk_ww} == 1 || defined $drop{$bk_ww} && $hijos{$bk_ww} == $drop{$bk_ww} || defined $banned{$bk_ww} && $banned{$bk_ww} == $hijos{$bk_ww} |
|
4992
|
0 |
94 |
0 |
defined $banned_bk_w and $banned_bk_w > $hijos_bk_w |
|
5073
|
0 |
0 |
0 |
$blist->contains($n_id) and $explored_set->contains($n_id) |
|
5142
|
0 |
0 |
0 |
$local_id and $uri |
| line |
l |
!l&&r |
!l&&!r |
condition |
|
1155
|
2 |
0 |
18 |
$scope eq 'ANY' and $s_text eq $name_or_synonym or $syn->scope eq $scope and $s_text eq $name_or_synonym |
|
1189
|
2 |
0 |
18 |
$scope eq 'ANY' and $s_text eq $name_or_synonym or $syn->scope eq $scope and $s_text eq $name_or_synonym |
|
2955
|
0 |
2 |
0 |
$self->id || $self->get_terms_idspace |
|
3061
|
645 |
2 |
0 |
$local_idspace || (split(/:/, $term_id, 0))[0] |
|
4215
|
5 |
11 |
0 |
shift() || $stderr_fh |
|
4714
|
859 |
0 |
5491 |
$hijos{$bk_ww} == 1 || defined $drop{$bk_ww} && $hijos{$bk_ww} == $drop{$bk_ww} || defined $banned{$bk_ww} && $banned{$bk_ww} == $hijos{$bk_ww} |
|
4773
|
1 |
1 |
98 |
not defined $bstop or $bstop->size == 0 |
|
4841
|
5 |
0 |
155 |
$hijos{$bk_ww} == 1 || defined $drop{$bk_ww} && $hijos{$bk_ww} == $drop{$bk_ww} || defined $banned{$bk_ww} && $banned{$bk_ww} == $hijos{$bk_ww} |
|
4900
|
1 |
1 |
136 |
not defined $bstop or $bstop->size == 0 |
|
4972
|
29 |
0 |
246 |
$hijos{$bk_ww} == 1 || defined $drop{$bk_ww} && $hijos{$bk_ww} == $drop{$bk_ww} || defined $banned{$bk_ww} && $banned{$bk_ww} == $hijos{$bk_ww} |
|
5065
|
0 |
0 |
0 |
$blist->contains($n_id) or $brels->contains(sort(values %{$onto->{'TARGET_SOURCE_RELATIONSHIPS'}{$onto->get_term_by_id($p_id)}{$onto->get_term_by_id($n_id)};})) |