line |
!l |
l&&!r |
l&&r |
condition |
481
|
0 |
2 |
3 |
defined $id and defined $$self{'TERMS'}{$id} |
511
|
0 |
1 |
1 |
defined $id and defined $$self{'INSTANCES'}{$id} |
536
|
0 |
0 |
56 |
defined $id and defined $$self{'RELATIONSHIPS'}{$id} |
563
|
1 |
117 |
6704 |
defined $term && $$self{'TERMS_SET'}->contains($term) |
577
|
0 |
3 |
18 |
defined $instance && defined $$self{'INSTANCES'}{$instance->id} |
593
|
0 |
7 |
3 |
defined $term_id && defined $$self{'TERMS'}{$term_id} |
609
|
0 |
6 |
3 |
defined $instance_id && defined $$self{'INSTANCES'}{$instance_id} |
625
|
0 |
8 |
268 |
defined $relationship_type && defined $$self{'RELATIONSHIP_TYPES'}{$relationship_type->id} |
639
|
0 |
72 |
3466 |
defined $relationship_type_id && defined $$self{'RELATIONSHIP_TYPES'}{$relationship_type_id} |
653
|
0 |
579 |
862 |
defined $id && defined $$self{'RELATIONSHIPS'}{$id} |
1006
|
0 |
0 |
3 |
$term and $new_term_id |
1057
|
0 |
0 |
2 |
$instance and $new_instance_id |
1104
|
0 |
881 |
12 |
defined $term->name and $term->name eq $name |
1125
|
0 |
6 |
4 |
defined $instance->name and $instance->name eq $name |
1149
|
0 |
20 |
0 |
defined $t_name and lc $t_name eq $name_or_synonym |
1155
|
15 |
3 |
2 |
$scope eq 'ANY' and $s_text eq $name_or_synonym |
|
12 |
3 |
3 |
$syn->scope eq $scope and $s_text eq $name_or_synonym |
1183
|
0 |
20 |
0 |
defined $t_name and lc $t_name eq $name_or_synonym |
1189
|
15 |
3 |
2 |
$scope eq 'ANY' and $s_text eq $name_or_synonym |
|
12 |
3 |
3 |
$syn->scope eq $scope and $s_text eq $name_or_synonym |
1220
|
0 |
95 |
23 |
defined $term->name and lc($term->name) =~ /$name/ |
1247
|
0 |
19 |
6 |
defined $instance->name and lc($instance->name) =~ /$name/ |
1274
|
0 |
28 |
12 |
defined $relationship_type->name and lc($relationship_type->name) =~ /$name/ |
1294
|
3 |
26 |
12 |
defined $rel_type->name and lc $rel_type->name eq $name |
1329
|
62 |
0 |
3389 |
eval {
do {
$target_element->isa('OBO::Core::Term')
}
} and eval {
do {
$source_element->isa('OBO::Core::Term')
}
} |
|
0 |
0 |
62 |
eval {
do {
$target_element->isa('OBO::Core::RelationshipType')
}
} and eval {
do {
$source_element->isa('OBO::Core::RelationshipType')
}
} |
|
0 |
0 |
0 |
eval {
do {
$target_element->isa('OBO::Core::Term')
}
} and eval {
do {
$source_element->isa('OBO::Core::Instance')
}
} |
|
0 |
0 |
0 |
eval {
do {
$target_element->isa('OBO::Core::Instance')
}
} and eval {
do {
$source_element->isa('OBO::Core::Instance')
}
} |
1392
|
0 |
0 |
222 |
$tail and $head |
1477
|
0 |
26 |
93718 |
$element and $relationship_type |
1504
|
0 |
0 |
10 |
$element and $relationship_type |
2368
|
0 |
2 |
0 |
$base and not $base =~ /^http/ |
2573
|
857 |
427 |
13667 |
$rt_name and $rt_name ne 'is_a' |
2575
|
13667 |
0 |
0 |
$rdf_tc and $rt_name_clean eq 'part_of' |
4224
|
0 |
16 |
0 |
$error_file_handle eq $stderr_fh and not -w $error_file_handle |
4601
|
0 |
0 |
3 |
$db and $acc |
4605
|
0 |
3 |
3 |
$xref->db eq $db and $xref->acc eq $acc |
4624
|
0 |
0 |
3 |
$db and $acc |
4628
|
0 |
3 |
3 |
$xref->db eq $db and $xref->acc eq $acc |
4706
|
0 |
4516 |
0 |
defined $banned_sou and $banned_sou > $hijos_sou |
4714
|
578 |
3938 |
6673 |
$w > -1 and $bk_ww = $bk[$w], $hijos{$bk_ww} == 1 || defined $drop{$bk_ww} && $hijos{$bk_ww} == $drop{$bk_ww} || defined $banned{$bk_ww} && $banned{$bk_ww} == $hijos{$bk_ww} |
4734
|
0 |
6095 |
0 |
defined $banned_bk_w and $banned_bk_w > $hijos_bk_w |
4827
|
0 |
159 |
0 |
defined $banned_sou and $banned_sou > $hijos_sou |
4835
|
70 |
89 |
376 |
$w > -1 and $bk_ww = $bk[$w], $hijos{$bk_ww} == 1 || defined $drop{$bk_ww} && $hijos{$bk_ww} == $drop{$bk_ww} || defined $banned{$bk_ww} && $banned{$bk_ww} == $hijos{$bk_ww} |
4855
|
0 |
306 |
0 |
defined $banned_bk_w and $banned_bk_w > $hijos_bk_w |
4951
|
0 |
267 |
0 |
defined $banned_sou and $banned_sou > $hijos_sou |
4959
|
68 |
199 |
162 |
$w > -1 and $bk_ww = $bk[$w], $hijos{$bk_ww} == 1 || defined $drop{$bk_ww} && $hijos{$bk_ww} == $drop{$bk_ww} || defined $banned{$bk_ww} && $banned{$bk_ww} == $hijos{$bk_ww} |
4979
|
0 |
94 |
0 |
defined $banned_bk_w and $banned_bk_w > $hijos_bk_w |
5060
|
0 |
0 |
0 |
$blist->contains($n_id) and $explored_set->contains($n_id) |
5129
|
0 |
0 |
0 |
$local_id and $uri |
line |
l |
!l&&r |
!l&&!r |
condition |
1155
|
2 |
0 |
18 |
$scope eq 'ANY' and $s_text eq $name_or_synonym or $syn->scope eq $scope and $s_text eq $name_or_synonym |
1189
|
2 |
0 |
18 |
$scope eq 'ANY' and $s_text eq $name_or_synonym or $syn->scope eq $scope and $s_text eq $name_or_synonym |
2955
|
0 |
2 |
0 |
$self->id || $self->get_terms_idspace |
3061
|
645 |
2 |
0 |
$local_idspace || (split(/:/, $term_id, 0))[0] |
4215
|
5 |
11 |
0 |
shift() || $stderr_fh |
4714
|
859 |
0 |
5491 |
$hijos{$bk_ww} == 1 || defined $drop{$bk_ww} && $hijos{$bk_ww} == $drop{$bk_ww} || defined $banned{$bk_ww} && $banned{$bk_ww} == $hijos{$bk_ww} |
4835
|
5 |
0 |
155 |
$hijos{$bk_ww} == 1 || defined $drop{$bk_ww} && $hijos{$bk_ww} == $drop{$bk_ww} || defined $banned{$bk_ww} && $banned{$bk_ww} == $hijos{$bk_ww} |
4959
|
29 |
0 |
246 |
$hijos{$bk_ww} == 1 || defined $drop{$bk_ww} && $hijos{$bk_ww} == $drop{$bk_ww} || defined $banned{$bk_ww} && $banned{$bk_ww} == $hijos{$bk_ww} |
5052
|
0 |
0 |
0 |
$blist->contains($n_id) or $brels->contains(sort(values %{$$onto{'TARGET_SOURCE_RELATIONSHIPS'}{$onto->get_term_by_id($p_id)}{$onto->get_term_by_id($n_id)};})) |