| line |
true |
false |
branch |
|
75
|
2 |
38 |
if ($id) |
|
90
|
0 |
0 |
if ($name) |
|
105
|
1 |
28 |
if (scalar @_ > 1) { } |
|
|
1 |
27 |
elsif (scalar @_ == 1) { } |
|
125
|
1 |
61 |
if (scalar @_ > 1) { } |
|
|
0 |
61 |
elsif (scalar @_ == 1) { } |
|
145
|
1 |
61 |
if (scalar @_ > 1) { } |
|
|
0 |
61 |
elsif (scalar @_ == 1) { } |
|
165
|
10 |
22 |
if ($d) |
|
181
|
1 |
47 |
if ($drip) |
|
196
|
12 |
46 |
if ($dns) |
|
211
|
5 |
81 |
if (scalar @_ > 1) { } |
|
|
8 |
73 |
elsif (scalar @_ == 1) { } |
|
230
|
2 |
19 |
if ($dv) |
|
245
|
21 |
14 |
if ($sb) |
|
260
|
1 |
56 |
if (scalar @_ > 1) { } |
|
|
21 |
35 |
elsif (scalar @_ == 1) { } |
|
294
|
6 |
55 |
if (scalar @_ > 1) { } |
|
|
1 |
54 |
elsif (scalar @_ == 1) { } |
|
314
|
2293 |
0 |
if ($term) { } |
|
316
|
2293 |
0 |
if ($term_id) { } |
|
339
|
18 |
0 |
if ($instance) { } |
|
341
|
18 |
0 |
if (defined $instance_id) { } |
|
364
|
1 |
0 |
if (@_) { } |
|
366
|
1 |
0 |
if (not $self->has_term_id($term_id)) { } |
|
368
|
0 |
1 |
unless $term_id |
|
393
|
1 |
0 |
if (@_) { } |
|
395
|
1 |
0 |
if (not $self->has_instance_id($instance_id)) { } |
|
397
|
0 |
1 |
unless $instance_id |
|
422
|
142 |
0 |
if ($relationship_type) { } |
|
444
|
27 |
0 |
if (@_) { } |
|
447
|
0 |
27 |
unless $relationship_type_id |
|
449
|
27 |
0 |
if (not $self->has_relationship_type_id($relationship_type_id)) { } |
|
477
|
5 |
0 |
if ($term) |
|
478
|
0 |
5 |
unless $term->id |
|
481
|
3 |
2 |
if (defined $id and defined $$self{'TERMS'}{$id}) |
|
507
|
2 |
0 |
if ($instance) |
|
508
|
0 |
2 |
unless $instance->id |
|
511
|
1 |
1 |
if (defined $id and defined $$self{'INSTANCES'}{$id}) |
|
532
|
56 |
0 |
if ($relationship) |
|
533
|
0 |
56 |
unless $relationship->id |
|
536
|
56 |
0 |
if (defined $id and defined $$self{'RELATIONSHIPS'}{$id}) |
|
687
|
6 |
88 |
if (@_) { } |
|
689
|
19 |
11 |
if $term->id =~ /$_[0]/ |
|
713
|
6 |
40 |
if (@_) { } |
|
715
|
19 |
11 |
if $instance->id =~ /$_[0]/ |
|
768
|
2 |
0 |
if (@_) |
|
770
|
0 |
2 |
if (not defined $is) { } |
|
791
|
2 |
0 |
if (@_) |
|
793
|
0 |
2 |
if (not defined $is) { } |
|
816
|
2 |
2 |
if $ss =~ /$subset/ |
|
836
|
2 |
2 |
if $ss =~ /$subset/ |
|
914
|
9 |
0 |
if ($term) |
|
915
|
1 |
8 |
if ($rel_type) { } |
|
947
|
99 |
0 |
if ($term) |
|
948
|
1 |
98 |
if ($rel_type) { } |
|
1006
|
3 |
0 |
if ($term and $new_term_id) |
|
1007
|
3 |
0 |
if ($self->has_term($term)) { } |
|
1008
|
3 |
0 |
if (not $self->has_term_id($new_term_id)) { } |
|
1057
|
2 |
0 |
if ($instance and $new_instance_id) |
|
1058
|
2 |
0 |
if ($self->has_instance($instance)) { } |
|
1059
|
2 |
0 |
if (not $self->has_instance_id($new_instance_id)) { } |
|
1086
|
4689 |
0 |
if $id |
|
1102
|
12 |
0 |
if ($name) |
|
1104
|
12 |
881 |
if defined $term->name and $term->name eq $name |
|
1123
|
4 |
0 |
if ($name) |
|
1125
|
4 |
6 |
if defined $instance->name and $instance->name eq $name |
|
1144
|
8 |
0 |
if ($name_or_synonym) |
|
1149
|
0 |
20 |
if (defined $t_name and lc $t_name eq $name_or_synonym) |
|
1155
|
5 |
15 |
if ($scope eq 'ANY' and $s_text eq $name_or_synonym or $syn->scope eq $scope and $s_text eq $name_or_synonym) |
|
1178
|
8 |
0 |
if ($name_or_synonym) |
|
1183
|
0 |
20 |
if (defined $t_name and lc $t_name eq $name_or_synonym) |
|
1189
|
5 |
15 |
if ($scope eq 'ANY' and $s_text eq $name_or_synonym or $syn->scope eq $scope and $s_text eq $name_or_synonym) |
|
1211
|
16 |
0 |
if ($name) |
|
1220
|
23 |
95 |
if defined $term->name and lc($term->name) =~ /$name/ |
|
1238
|
5 |
0 |
if ($name) |
|
1247
|
6 |
19 |
if defined $instance->name and lc($instance->name) =~ /$name/ |
|
1265
|
8 |
0 |
if ($name) |
|
1274
|
12 |
28 |
if defined $relationship_type->name and lc($relationship_type->name) =~ /$name/ |
|
1292
|
12 |
0 |
if ($name) |
|
1294
|
12 |
29 |
if defined $rel_type->name and lc $rel_type->name eq $name |
|
1317
|
0 |
3451 |
unless $rel_id |
|
1318
|
0 |
3451 |
unless $rel_type |
|
1329
|
3389 |
62 |
if (eval {
do {
$target_element->isa('OBO::Core::Term')
}
} and eval {
do {
$source_element->isa('OBO::Core::Term')
}
}) { } |
|
|
62 |
0 |
elsif (eval {
do {
$target_element->isa('OBO::Core::RelationshipType')
}
} and eval {
do {
$source_element->isa('OBO::Core::RelationshipType')
}
}) { } |
|
|
0 |
0 |
elsif (eval {
do {
$target_element->isa('OBO::Core::Term')
}
} and eval {
do {
$source_element->isa('OBO::Core::Instance')
}
}) { } |
|
|
0 |
0 |
elsif (eval {
do {
$target_element->isa('OBO::Core::Instance')
}
} and eval {
do {
$source_element->isa('OBO::Core::Instance')
}
}) { } |
|
1330
|
68 |
3321 |
unless $self->has_term($target_element) |
|
1331
|
38 |
3351 |
unless $self->has_term($source_element) |
|
1333
|
0 |
62 |
unless $self->has_relationship_type($target_element) |
|
1334
|
0 |
62 |
unless $self->has_relationship_type($source_element) |
|
1336
|
0 |
0 |
unless $self->has_term($target_element) |
|
1337
|
0 |
0 |
unless $self->has_instance($source_element) |
|
1339
|
0 |
0 |
unless $self->has_instance($target_element) |
|
1340
|
0 |
0 |
unless $self->has_instance($source_element) |
|
1348
|
36 |
3415 |
unless ($self->has_relationship_type_id($rel_type)) |
|
1390
|
0 |
222 |
unless $$self{'RELATIONSHIP_TYPES'}{$type} |
|
1392
|
222 |
0 |
if ($tail and $head) { } |
|
1395
|
26 |
196 |
if ($self->has_relationship_id($id)) { } |
|
1427
|
221 |
0 |
if ($term) |
|
1452
|
22912 |
0 |
if ($term) |
|
1477
|
93718 |
26 |
if ($element and $relationship_type) |
|
1484
|
7650 |
133052 |
if $rel->type eq $relationship_type_id |
|
1504
|
10 |
0 |
if ($element and $relationship_type) |
|
1511
|
6 |
7 |
if $rel->type eq $relationship_type_id |
|
1539
|
14 |
36 |
if ($#hashes == -1) { } |
|
1629
|
1 |
7 |
if $data_version |
|
1632
|
1 |
7 |
if $ontology_id_space |
|
1634
|
5 |
3 |
defined $self->date ? : |
|
1637
|
6 |
2 |
if defined $saved_by |
|
1662
|
1 |
7 |
if defined $dris |
|
1666
|
5 |
3 |
if defined $dns |
|
1703
|
2 |
754 |
if $term->is_anonymous |
|
1708
|
746 |
10 |
if (defined $term->name) |
|
1729
|
0 |
756 |
if $term->builtin |
|
1736
|
3 |
1 |
if (defined $value->head->instance_of) { } |
|
1747
|
530 |
226 |
if (defined $term->def->text) |
|
1758
|
163 |
593 |
if defined $term->comment |
|
1764
|
34 |
0 |
if ($self->subset_def_map->contains_key($sset_name)) { } |
|
1780
|
3 |
836 |
if (defined $stn) { } |
|
1799
|
756 |
0 |
if (defined $rt) |
|
1805
|
645 |
2 |
if defined $head_name |
|
1818
|
0 |
0 |
if $tr_type ne 'nil' |
|
1820
|
0 |
0 |
if defined $intersection_of_name |
|
1837
|
7 |
0 |
if defined $dt |
|
1838
|
7 |
0 |
if defined $dt_name |
|
1849
|
19653 |
756 |
if ($rt_id ne 'is_a') |
|
1855
|
443 |
3 |
if defined $relationship_name |
|
1864
|
2 |
754 |
if defined $term->created_by |
|
1869
|
2 |
754 |
if defined $term->creation_date |
|
1874
|
0 |
756 |
if defined $term->modified_by |
|
1879
|
0 |
756 |
if defined $term->modification_date |
|
1884
|
0 |
756 |
if $term->is_obsolete |
|
1926
|
0 |
4 |
if $instance->is_anonymous |
|
1931
|
2 |
2 |
if (defined $instance->name) |
|
1952
|
0 |
4 |
if $instance->builtin |
|
1957
|
0 |
4 |
if defined $instance->comment |
|
1963
|
0 |
0 |
if ($self->subset_def_map->contains_key($sset_name)) { } |
|
1979
|
0 |
0 |
if (defined $stn) { } |
|
1998
|
2 |
2 |
if ($class) |
|
2001
|
0 |
2 |
if defined $class_name |
|
2022
|
0 |
0 |
if $tr_type ne 'nil' |
|
2024
|
0 |
0 |
if defined $intersection_of_name |
|
2041
|
0 |
0 |
if defined $dt |
|
2042
|
0 |
0 |
if defined $dt_name |
|
2053
|
40 |
4 |
if ($rt_id ne 'is_a') |
|
2059
|
0 |
0 |
if defined $relationship_name |
|
2068
|
0 |
4 |
if defined $instance->created_by |
|
2073
|
0 |
4 |
if defined $instance->creation_date |
|
2078
|
0 |
4 |
if defined $instance->modified_by |
|
2083
|
0 |
4 |
if defined $instance->modification_date |
|
2088
|
0 |
4 |
if $instance->is_obsolete |
|
2127
|
0 |
89 |
if $relationship_type->is_anonymous |
|
2133
|
81 |
8 |
if (defined $relationship_type_name) |
|
2154
|
3 |
86 |
if $relationship_type->builtin == 1 |
|
2159
|
36 |
53 |
if defined $relationship_type->def->text |
|
2164
|
21 |
68 |
if defined $relationship_type->comment |
|
2170
|
1 |
0 |
if ($self->subset_def_map->contains_key($sset_name)) { } |
|
2206
|
7 |
82 |
if $relationship_type->is_anti_symmetric == 1 |
|
2207
|
0 |
89 |
if $relationship_type->is_cyclic == 1 |
|
2208
|
13 |
76 |
if $relationship_type->is_reflexive == 1 |
|
2209
|
1 |
88 |
if $relationship_type->is_symmetric == 1 |
|
2210
|
26 |
63 |
if $relationship_type->is_transitive == 1 |
|
2216
|
89 |
0 |
if (defined $rt) |
|
2220
|
32 |
0 |
if (defined $head_name) { } |
|
2237
|
0 |
0 |
if $tr_type ne 'nil' |
|
2239
|
0 |
0 |
if defined $intersection_of_name |
|
2256
|
0 |
0 |
if defined $dt |
|
2257
|
0 |
0 |
if defined $dt_name |
|
2265
|
16 |
73 |
if (defined $ir) |
|
2267
|
15 |
1 |
if (defined $inv_name) { } |
|
2295
|
0 |
89 |
if $relationship_type->is_functional == 1 |
|
2300
|
0 |
89 |
if $relationship_type->is_inverse_functional == 1 |
|
2305
|
1 |
88 |
if defined $relationship_type->created_by |
|
2310
|
1 |
88 |
if defined $relationship_type->creation_date |
|
2315
|
0 |
89 |
if defined $relationship_type->modified_by |
|
2320
|
0 |
89 |
if defined $relationship_type->modification_date |
|
2325
|
0 |
89 |
if $relationship_type->is_obsolete |
|
2344
|
0 |
89 |
if $relationship_type->is_metadata_tag == 1 |
|
2349
|
0 |
89 |
if $relationship_type->is_class_level == 1 |
|
2368
|
0 |
2 |
if ($base and not $base =~ /^http/) { } |
|
|
0 |
2 |
elsif (not defined $namespace) { } |
|
2397
|
1284 |
0 |
$1 ? : |
|
2404
|
0 |
1284 |
if $term->is_anonymous |
|
2410
|
1284 |
0 |
defined $term_name ? : |
|
2423
|
0 |
1284 |
if $term->builtin == 1 |
|
2430
|
0 |
0 |
if (defined $value->head->instance_of) { } |
|
2450
|
789 |
495 |
if (defined $term->def->text) |
|
2470
|
30 |
1254 |
if (defined $term->comment) |
|
2478
|
0 |
0 |
if ($self->subset_def_map->contains_key($sset_name)) { } |
|
2525
|
1284 |
0 |
if (defined $rt) |
|
2526
|
0 |
1284 |
if $rdf_tc |
|
2547
|
0 |
0 |
if $tr_type ne 'nil' |
|
2573
|
13667 |
1284 |
if ($rt_name and $rt_name ne 'is_a') |
|
2575
|
0 |
13667 |
if $rdf_tc and $rt_name_clean eq 'part_of' |
|
2589
|
0 |
1284 |
if defined $term->created_by |
|
2594
|
0 |
1284 |
if defined $term->creation_date |
|
2599
|
0 |
1284 |
if defined $term->modified_by |
|
2604
|
0 |
1284 |
if defined $term->modification_date |
|
2609
|
19 |
1265 |
if $term->is_obsolete == 1 |
|
2646
|
2 |
0 |
unless ($skip) |
|
2656
|
0 |
33 |
if $relationship_type->is_anonymous |
|
2675
|
1 |
32 |
if $relationship_type->builtin == 1 |
|
2680
|
32 |
1 |
if (defined $relationship_type->name) { } |
|
2690
|
21 |
11 |
if (defined $relationship_type->def->text) |
|
2710
|
12 |
20 |
if (defined $relationship_type->comment) |
|
2718
|
0 |
0 |
if ($self->subset_def_map->contains_key($sset_name)) { } |
|
2775
|
5 |
27 |
if $relationship_type->is_anti_symmetric == 1 |
|
2776
|
0 |
32 |
if $relationship_type->is_cyclic == 1 |
|
2777
|
9 |
23 |
if $relationship_type->is_reflexive == 1 |
|
2778
|
1 |
31 |
if $relationship_type->is_symmetric == 1 |
|
2779
|
19 |
13 |
if $relationship_type->is_transitive == 1 |
|
2785
|
32 |
0 |
if (defined $rt) |
|
2805
|
0 |
0 |
if $tr_type ne 'nil' |
|
2829
|
0 |
32 |
if (defined $ir) |
|
2853
|
0 |
32 |
if $relationship_type->is_functional == 1 |
|
2858
|
0 |
32 |
if $relationship_type->is_inverse_functional == 1 |
|
2863
|
0 |
32 |
if defined $relationship_type->created_by |
|
2868
|
0 |
32 |
if defined $relationship_type->creation_date |
|
2873
|
0 |
32 |
if defined $relationship_type->modified_by |
|
2878
|
0 |
32 |
if defined $relationship_type->modification_date |
|
2883
|
0 |
32 |
if $relationship_type->is_obsolete == 1 |
|
2902
|
0 |
32 |
if $relationship_type->is_metadata_tag == 1 |
|
2907
|
0 |
32 |
if $relationship_type->is_class_level == 1 |
|
2933
|
0 |
2 |
unless ($oboContentUrl =~ /^http/) |
|
2937
|
0 |
2 |
unless ($oboInOwlUrl =~ /^http/) |
|
2987
|
2 |
0 |
if $self->date |
|
2988
|
0 |
2 |
if $self->data_version |
|
2989
|
0 |
2 |
if $self->id |
|
2990
|
1 |
1 |
if $self->saved_by |
|
2992
|
0 |
2 |
if $self->default_relationship_id_prefix |
|
2993
|
2 |
0 |
if $self->default_namespace |
|
3023
|
0 |
0 |
if defined $scope |
|
3031
|
0 |
2 |
if (defined $ids) |
|
3033
|
0 |
0 |
if ($local_idspace) |
|
3071
|
647 |
0 |
if $term->name |
|
3076
|
163 |
484 |
if $term->comment |
|
3082
|
0 |
0 |
if ($self->subset_def_map->contains_key($sset_name)) { } |
|
3092
|
490 |
157 |
if (defined $term->def->text) |
|
3109
|
699 |
109 |
if ($st eq 'EXACT') { } |
|
|
14 |
95 |
elsif ($st eq 'BROAD') { } |
|
|
72 |
23 |
elsif ($st eq 'NARROW') { } |
|
|
23 |
0 |
elsif ($st eq 'RELATED') { } |
|
3155
|
647 |
0 |
if (defined $rt) |
|
3185
|
0 |
647 |
if (@intersection_of) |
|
3193
|
0 |
0 |
$tr =~ /([A-Z]+):/ ? : |
|
3194
|
0 |
0 |
if (scalar @inter == 1) { } |
|
|
0 |
0 |
elsif (scalar @inter == 2) { } |
|
3195
|
0 |
0 |
$tr =~ /([A-Z]+):/ ? : |
|
3217
|
0 |
647 |
if (@union_of) |
|
3223
|
0 |
0 |
$tr =~ /([A-Z]+):/ ? : |
|
3242
|
18444 |
647 |
if ($rt->id ne 'is_a') |
|
3261
|
0 |
647 |
if $term->is_obsolete |
|
3301
|
2 |
29 |
if $relationship_type_id eq 'is_a' |
|
3312
|
29 |
0 |
if (defined $relationship_type_name) |
|
3319
|
11 |
18 |
if $relationship_type->comment |
|
3324
|
19 |
10 |
if (defined $relationship_type->def->text) |
|
3341
|
3 |
0 |
if ($st eq 'EXACT') { } |
|
|
0 |
0 |
elsif ($st eq 'BROAD') { } |
|
|
0 |
0 |
elsif ($st eq 'NARROW') { } |
|
|
0 |
0 |
elsif ($st eq 'RELATED') { } |
|
3380
|
29 |
0 |
if (defined $rt) |
|
3390
|
17 |
12 |
if $relationship_type->is_transitive |
|
3391
|
1 |
28 |
if $relationship_type->is_symmetric |
|
3392
|
0 |
29 |
if $relationship_type->is_metadata_tag |
|
3393
|
0 |
29 |
if $relationship_type->is_class_level |
|
3475
|
0 |
2 |
if $data_version |
|
3478
|
0 |
2 |
if $ontology_id_space |
|
3480
|
2 |
0 |
defined $self->date ? : |
|
3484
|
1 |
1 |
if $saved_by |
|
3517
|
0 |
2 |
if defined $dris |
|
3521
|
2 |
0 |
if defined $dns |
|
3559
|
0 |
651 |
if $term->is_anonymous |
|
3564
|
651 |
0 |
if defined $term->name |
|
3583
|
0 |
651 |
if $term->builtin == 1 |
|
3590
|
0 |
0 |
if (defined $value->head->instance_of) { } |
|
3609
|
489 |
162 |
if (defined $term_def->text) |
|
3625
|
163 |
488 |
if defined $comment |
|
3631
|
0 |
0 |
if ($self->subset_def_map->contains_key($sset_name)) { } |
|
3666
|
651 |
0 |
if (defined $rt) |
|
3671
|
564 |
0 |
defined $head_name ? : |
|
3686
|
0 |
0 |
if $tr_type ne 'nil' |
|
3710
|
18459 |
651 |
if ($rt->name ne 'is_a') |
|
3725
|
1 |
650 |
if defined $term->created_by |
|
3730
|
1 |
650 |
if defined $term->creation_date |
|
3735
|
0 |
651 |
if defined $term->modified_by |
|
3740
|
0 |
651 |
if defined $term->modification_date |
|
3745
|
0 |
651 |
if $term->is_obsolete |
|
3793
|
0 |
32 |
if $relationship_type->is_anonymous |
|
3799
|
32 |
0 |
if (defined $relationship_type_name) |
|
3820
|
2 |
30 |
if $relationship_type->builtin == 1 |
|
3826
|
21 |
11 |
if (defined $relationship_type_def->text) |
|
3840
|
13 |
19 |
if defined $relationship_type->comment |
|
3846
|
0 |
0 |
if ($self->subset_def_map->contains_key($sset_name)) { } |
|
3891
|
6 |
26 |
if $relationship_type->is_anti_symmetric == 1 |
|
3892
|
0 |
32 |
if $relationship_type->is_cyclic == 1 |
|
3893
|
10 |
22 |
if $relationship_type->is_reflexive == 1 |
|
3894
|
1 |
31 |
if $relationship_type->is_symmetric == 1 |
|
3895
|
20 |
12 |
if $relationship_type->is_transitive == 1 |
|
3901
|
32 |
0 |
if (defined $rt) |
|
3918
|
0 |
0 |
if $tr_type ne 'nil' |
|
3935
|
0 |
32 |
if (defined $df) |
|
3943
|
2 |
30 |
if (defined $ir) |
|
3967
|
0 |
32 |
if $relationship_type->is_functional == 1 |
|
3972
|
0 |
32 |
if $relationship_type->is_inverse_functional == 1 |
|
3977
|
1 |
31 |
if defined $relationship_type->created_by |
|
3982
|
1 |
31 |
if defined $relationship_type->creation_date |
|
3987
|
0 |
32 |
if $relationship_type->is_obsolete |
|
4006
|
0 |
32 |
if $relationship_type->is_metadata_tag == 1 |
|
4011
|
0 |
32 |
if $relationship_type->is_class_level == 1 |
|
4049
|
647 |
0 |
if (defined $rt) |
|
4053
|
0 |
560 |
if (not defined $term->name) { } |
|
|
0 |
560 |
elsif (not defined $head->name) { } |
|
4067
|
18444 |
647 |
if ($rt->name ne 'is_a') |
|
4069
|
335 |
18109 |
if @heads |
|
4073
|
0 |
370 |
if (not defined $term->name) { } |
|
|
0 |
370 |
elsif (not defined $head->name) { } |
|
4125
|
0 |
0 |
unless $term_sns |
|
4127
|
0 |
0 |
defined $id ? : |
|
4136
|
0 |
0 |
if $color_id{$term_sns} |
|
4142
|
0 |
0 |
if defined $term->def->text |
|
4152
|
0 |
0 |
if (not defined $term->name) { } |
|
|
0 |
0 |
elsif (not defined $head->name) { } |
|
4160
|
0 |
0 |
defined $id{$head->subnamespace} ? : |
|
4209
|
0 |
16 |
unless ($possible_formats->contains($format)) |
|
4218
|
0 |
16 |
if (not -w $output_file_handle) { } |
|
|
0 |
16 |
elsif (not -e $error_file_handle) { } |
|
4224
|
0 |
16 |
if ($error_file_handle eq $stderr_fh and not -w $error_file_handle) |
|
4230
|
8 |
8 |
if ($format eq 'obo') { } |
|
|
2 |
6 |
elsif ($format eq 'rdf') { } |
|
|
2 |
4 |
elsif ($format eq 'xml') { } |
|
|
2 |
2 |
elsif ($format eq 'owl') { } |
|
|
2 |
0 |
elsif ($format eq 'dot') { } |
|
|
0 |
0 |
elsif ($format eq 'gml') { } |
|
|
0 |
0 |
elsif ($format eq 'xgmml') { } |
|
|
0 |
0 |
elsif ($format eq 'sbml') { } |
|
4290
|
3 |
0 |
unless ($result->has_term($term)) |
|
4301
|
0 |
3 |
unless ($result->has_term($descendent)) |
|
4314
|
0 |
3 |
unless $result->has_relationship_type($rel_type) |
|
4335
|
3 |
0 |
if ($root_term) |
|
4336
|
0 |
3 |
unless $self->has_term($root_term) |
|
4350
|
0 |
3 |
if ($rel_type_ids) |
|
4361
|
0 |
37 |
if ($rel_type_ids) { } |
|
4362
|
0 |
0 |
$$rel_type_ids{$rel->type} ? : |
|
4367
|
0 |
37 |
unless $result->has_relationship_type($rel_type) |
|
4389
|
2 |
9 |
if ($self->id) { } |
|
4398
|
8 |
0 |
if defined $NS |
|
4400
|
8 |
1 |
$NS ? : |
|
4416
|
0 |
2 |
if ($self->id) { } |
|
4425
|
2 |
0 |
if defined $NS |
|
4427
|
2 |
0 |
$NS ? : |
|
4443
|
12 |
0 |
if ($term) |
|
4444
|
4 |
8 |
unless (eval {
do {
$term->isa('OBO::Core::Term')
}
}) |
|
4472
|
5 |
0 |
if ($term) |
|
4497
|
4 |
0 |
if (@_) |
|
4502
|
4 |
3 |
if substr($unqueued->id, 4, length $subnamespace) eq $subnamespace |
|
4523
|
4 |
0 |
if (@_) |
|
4528
|
10 |
1 |
if substr($unqueued->id, 4, length $subnamespace) eq $subnamespace |
|
4549
|
4 |
0 |
if (@_) |
|
4575
|
4 |
0 |
if (@_) |
|
4601
|
3 |
0 |
if ($db and $acc) |
|
4605
|
3 |
3 |
if $xref->db eq $db and $xref->acc eq $acc |
|
4624
|
3 |
0 |
if ($db and $acc) |
|
4628
|
3 |
3 |
if $xref->db eq $db and $xref->acc eq $acc |
|
4666
|
686 |
10611 |
unless defined $p_id |
|
4679
|
883 |
9728 |
if ($bstop eq $n_id) |
|
4690
|
4516 |
6095 |
if ($#ps == -1) { } |
|
4706
|
0 |
4516 |
if (defined $banned_sou and $banned_sou > $hijos_sou) |
|
4725
|
650 |
6023 |
if $banned{$p_id} < $hijos{$p_id} |
|
4728
|
6095 |
578 |
if ($w > -1) |
|
4734
|
0 |
6095 |
if (defined $banned_bk_w and $banned_bk_w > $hijos_bk_w) |
|
4789
|
0 |
465 |
unless defined $p_id |
|
4802
|
401 |
64 |
if ($bstop->contains($n_id)) |
|
4811
|
159 |
306 |
if ($#ps == -1) { } |
|
4827
|
0 |
159 |
if (defined $banned_sou and $banned_sou > $hijos_sou) |
|
4846
|
0 |
376 |
if $banned{$p_id} < $hijos{$p_id} |
|
4849
|
306 |
70 |
if ($w > -1) |
|
4855
|
0 |
306 |
if (defined $banned_bk_w and $banned_bk_w > $hijos_bk_w) |
|
4912
|
4 |
361 |
unless defined $p_id |
|
4926
|
358 |
3 |
if ($bstop->contains($n_id)) |
|
4935
|
267 |
94 |
if ($#ps == -1) { } |
|
4951
|
0 |
267 |
if (defined $banned_sou and $banned_sou > $hijos_sou) |
|
4970
|
1 |
161 |
if $banned{$p_id} < $hijos{$p_id} |
|
4973
|
94 |
68 |
if ($w > -1) |
|
4979
|
0 |
94 |
if (defined $banned_bk_w and $banned_bk_w > $hijos_bk_w) |
|
5029
|
0 |
12 |
unless caller eq 'OBO::Core::Ontology' |
|
5035
|
0 |
0 |
unless caller eq 'OBO::Core::Ontology' |
|
5052
|
0 |
0 |
if ($blist->contains($n_id) or $brels->contains(sort(values %{$$onto{'TARGET_SOURCE_RELATIONSHIPS'}{$onto->get_term_by_id($p_id)}{$onto->get_term_by_id($n_id)};}))) |
|
5060
|
0 |
0 |
unless ($blist->contains($n_id) and $explored_set->contains($n_id)) |
|
5067
|
0 |
0 |
unless (@ps) |
|
5069
|
0 |
0 |
unless @nei |
|
5089
|
0 |
0 |
unless ($brels->contains($crel->id)) |
|
5094
|
0 |
0 |
if ($all_banned) |
|
5102
|
0 |
0 |
unless ($brels->contains($drel->id)) |
|
5107
|
0 |
0 |
if ($all_rels_banned) |
|
5121
|
0 |
13667 |
unless caller eq 'OBO::Core::Ontology' |
|
5127
|
0 |
0 |
unless caller eq 'OBO::Core::Ontology' |
|
5129
|
0 |
0 |
if ($local_id and $uri) |
|
5133
|
0 |
0 |
if defined $description |
|
5143
|
0 |
0 |
if defined $idspace_description_string |
|
5147
|
0 |
0 |
if (not @idspaces_as_string) { } |
|
5155
|
0 |
2848 |
unless caller eq 'OBO::Core::Ontology' |
|
5164
|
0 |
129368 |
unless caller eq 'OBO::Core::Ontology' |
|
5173
|
0 |
1996 |
unless caller eq 'OBO::Core::Ontology' |
|
5187
|
7 |
970 |
if ($db eq 'http') { } |
|
5210
|
0 |
6775 |
unless caller eq 'OBO::Core::Ontology' |