| blib/lib/MEME/Alphabet.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 32 | 60 | 53.3 |
| pod | 0 | 42 | 0.0 |
| line | count | pod | subroutine |
|---|---|---|---|
| 49 | 2 | n/a | BEGIN |
| 50 | 2 | n/a | BEGIN |
| 51 | 2 | n/a | BEGIN |
| 53 | 2 | n/a | BEGIN |
| 54 | 2 | n/a | BEGIN |
| 57 | 2 | n/a | BEGIN |
| 74 | 5 | No | new |
| 82 | 5 | n/a | _init |
| 109 | 0 | n/a | _error |
| 119 | 4 | No | parse_header |
| 131 | 60 | No | uniq |
| 136 | 92 | No | parse_symbol |
| 179 | 0 | No | parse_line |
| 200 | 106 | n/a | _add_lookup |
| 212 | 4 | No | parse_done |
| 474 | 0 | No | parse_file |
| 489 | 0 | n/a | _sym_to_text |
| 502 | 0 | No | to_text |
| 567 | 0 | No | to_json |
| 598 | 4 | No | has_errors |
| 603 | 0 | No | get_errors |
| 608 | 0 | No | name |
| 618 | 5 | No | has_complement |
| 624 | 8 | No | size_core |
| 629 | 8 | No | size_full |
| 638 | 6 | n/a | _flatten_list_in_scalar_context |
| 651 | 0 | No | get_ambig_syms |
| 669 | 3 | No | get_syms |
| 685 | 3 | No | get_core |
| 702 | 0 | No | get_alternates_dict |
| 714 | 62 | No | is_core |
| 724 | 0 | No | is_known |
| 736 | 0 | No | is_ambig_seq |
| 747 | 0 | No | is_part_ambig_seq |
| 755 | 0 | No | char |
| 767 | 0 | No | index |
| 780 | 0 | No | encode |
| 792 | 0 | No | comprise |
| 811 | 0 | No | regex |
| 826 | 0 | No | negate_set |
| 844 | 0 | No | find_unknown |
| 859 | 1 | No | rc_seq |
| 878 | 0 | No | translate_seq |
| 913 | 1 | No | get_Weblogo_colour_args |
| 933 | 2 | No | equals |
| 983 | 1 | No | is_dna |
| 989 | 1 | No | is_moddna |
| 995 | 0 | No | is_rna |
| 1001 | 0 | No | is_protein |
| 1010 | 0 | n/a | _decode_JSON_string |
| 1029 | 0 | n/a | _encode_JSON_string |
| 1046 | 0 | n/a | _decode_colour |
| 1057 | 526 | n/a | _symbol_cmp |
| 1119 | 216 | n/a | _symobj_cmp |
| 1181 | 0 | No | rna |
| 1220 | 4 | n/a | _parse_core_DNA_symbols |
| 1233 | 4 | n/a | _parse_ambiguous_DNA_symbols |
| 1252 | 2 | No | dna |
| 1272 | 2 | No | moddna |
| 1312 | 0 | No | protein |