| blib/lib/GenOO/Data/File/SAM/Record.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 29 | 31 | 93.5 |
| pod | 0 | 22 | 0.0 |
| line | count | pod | subroutine |
|---|---|---|---|
| 45 | 1 | n/a | BEGIN |
| 46 | 1 | n/a | BEGIN |
| 47 | 1 | n/a | BEGIN |
| 48 | 1 | n/a | BEGIN |
| 139 | 2 | No | qname |
| 145 | 2042 | No | flag |
| 151 | 647 | No | rname |
| 157 | 48 | No | pos |
| 163 | 2 | No | mapq |
| 169 | 196 | No | cigar |
| 175 | 2 | No | rnext |
| 181 | 2 | No | pnext |
| 187 | 2 | No | tlen |
| 193 | 29 | No | seq |
| 199 | 2 | No | qual |
| 205 | 0 | No | sequence |
| 211 | 8 | No | query_seq |
| 232 | 19 | No | query_length |
| 238 | 45 | No | tag |
| 246 | 32 | No | mdz |
| 252 | 1 | No | to_string |
| 258 | 1349 | No | is_mapped |
| 269 | 3 | No | is_unmapped |
| 280 | 0 | No | is_secondary |
| 291 | 1 | No | add_tag |
| 302 | 1 | No | set_flag |
| 312 | 6 | n/a | _calculate_alignment_length |
| 318 | 46 | n/a | _calculate_start |
| 324 | 13 | n/a | _calculate_stop |
| 330 | 687 | n/a | _calculate_strand |
| 344 | 29 | n/a | _read_tags |