| line |
true |
false |
branch |
|
105
|
2 |
8 |
if ($exon->contains_position($position))
|
|
117
|
1 |
3 |
if ($intron->contains_position($position))
|
|
132
|
1 |
0 |
if (@$exons > 1)
|
|
139
|
1 |
0 |
@junction_starts == @junction_stops ? :
|
|
156
|
1 |
0 |
if (defined $self->sequence)
|
|
159
|
0 |
1 |
$self->strand == 1 ? :
|
|
164
|
0 |
1 |
if ($self->strand == 1) { }
|
|
198
|
1 |
1 |
if ($self->is_position_within_exon($abs_pos)) { }
|
|
201
|
0 |
1 |
if ($intron->stop < $abs_pos) { }
|
|
254
|
0 |
3 |
if ($self->start < $$exon_starts[0])
|
|
274
|
0 |
3 |
if ($self->stop > $$exon_stops[-1])
|
|
293
|
0 |
2015 |
if (@$splice_starts != @$splice_stops)
|
|
299
|
0 |
5547 |
if ($$splice_stops[$index] == $$splice_starts[$index + 1] - 1) { }
|
|
319
|
14 |
34 |
if ($$pre_splice_stops[$i] < $start) { }
|
|
|
14 |
20 |
elsif ($$pre_splice_starts[$i] > $stop) { }
|
|
326
|
6 |
14 |
if ($start >= $$pre_splice_starts[$i]) { }
|
|
332
|
4 |
16 |
if ($stop < $$pre_splice_stops[$i]) { }
|
|
346
|
3472 |
4588 |
if (@{$arrayref;} > 1)
|
|
348
|
20 |
22148 |
if ($$arrayref[$i] < $$arrayref[$i - 1])
|