| line |
true |
false |
branch |
|
74
|
1 |
4 |
unless defined $self->strand
|
|
76
|
3 |
1 |
if ($self->strand == 1) { }
|
|
|
1 |
0 |
elsif ($self->strand == -1) { }
|
|
88
|
22 |
22 |
if ($self->strand == 1) { }
|
|
|
22 |
0 |
elsif ($self->strand == -1) { }
|
|
102
|
18 |
18 |
if ($self->strand == 1) { }
|
|
|
18 |
0 |
elsif ($self->strand == -1) { }
|
|
122
|
2 |
8 |
if $self->rname ne $from_locus->rname
|
|
129
|
2 |
8 |
if $self->rname ne $from_locus->rname
|
|
136
|
0 |
0 |
if $self->rname ne $from_locus->rname
|
|
143
|
0 |
0 |
if $self->rname ne $from_locus->rname
|
|
150
|
2 |
8 |
if $self->rname ne $from_locus->rname
|
|
157
|
2 |
8 |
if $self->rname ne $from_locus->rname
|
|
164
|
0 |
0 |
if $self->rname ne $from_locus->rname
|
|
171
|
2 |
8 |
if $self->rname ne $from_locus->rname
|
|
178
|
2 |
8 |
if $self->rname ne $from_locus->rname
|
|
194
|
6 |
4 |
if ($use_strand == 0 || $self->strand == $region2->strand and $self->rname eq $region2->rname and $self->start - $offset <= $region2->stop and $region2->start <= $self->stop + $offset) { }
|
|
207
|
33 |
13 |
if ($use_strand == 0 || $self->strand == $region2->strand and $self->rname eq $region2->rname and $self->start <= $region2->stop and $region2->start <= $self->stop) { }
|
|
218
|
4 |
4 |
if ($self->overlaps($region2)) { }
|
|
219
|
2 |
2 |
$self->start > $region2->start ? :
|
|
220
|
0 |
4 |
$self->stop < $region2->stop ? :
|
|
233
|
4 |
8 |
if ($use_strand == 0 || $self->strand == $region2->strand and $self->rname eq $region2->rname and $self->start <= $region2->start and $region2->stop <= $self->stop) { }
|
|
244
|
199 |
15 |
if ($self->start <= $position and $position <= $self->stop) { }
|