| line |
true |
false |
branch |
|
184
|
2 |
0 |
if (defined $self->transcripts) { }
|
|
196
|
1 |
0 |
if (defined $self->transcripts) { }
|
|
208
|
350 |
0 |
if (defined $transcript and $transcript->isa('GenOO::Transcript')) { }
|
|
231
|
1 |
3 |
if (exists $counts{$exon->location} and $counts{$exon->location} == $transcript_count)
|
|
260
|
1 |
3 |
if (exists $counts{$exon->location} and $counts{$exon->location} == $transcript_count)
|
|
279
|
1 |
0 |
if ($transcript->is_coding)
|
|
338
|
163 |
0 |
if (defined $self->transcripts)
|
|
342
|
0 |
163 |
if (not defined $strand) { }
|
|
354
|
163 |
0 |
if (defined $self->transcripts)
|
|
358
|
0 |
163 |
if (not defined $chromosome) { }
|
|
370
|
193 |
0 |
if (defined $self->transcripts)
|
|
372
|
194 |
180 |
if (not defined $start or $start > $transcript->start)
|
|
378
|
0 |
193 |
if (not defined $start) { }
|
|
390
|
193 |
0 |
if (defined $self->transcripts)
|
|
392
|
235 |
139 |
if (not defined $stop or $stop < $transcript->stop)
|
|
398
|
0 |
193 |
if (not defined $stop) { }
|
|
424
|
0 |
0 |
unless $transcript->is_coding
|
|
425
|
0 |
0 |
unless defined $transcript->utr5
|
|
439
|
0 |
0 |
unless $transcript->is_coding
|
|
453
|
0 |
0 |
unless $transcript->is_coding
|
|
454
|
0 |
0 |
unless defined $transcript->utr3
|
|
471
|
2 |
6 |
if (defined $merge_region and $merge_region->overlaps($exon)) { }
|
|
472
|
0 |
2 |
if $exon->stop > $merge_region->stop
|