| line |
true |
false |
branch |
|
96
|
0 |
1 |
unless $src and $tgt |
|
104
|
1 |
0 |
if (eval {
do {
require Bio::Graphics::Browser2::CAlign
}
}) |
|
200
|
0 |
0 |
if defined $align->[0] |
|
201
|
0 |
0 |
if defined $align->[0] |
|
205
|
0 |
0 |
if (defined $t) { } |
|
206
|
0 |
0 |
$t - $last > 1 ? : |
|
217
|
0 |
0 |
if length $ps > length $pt |
|
218
|
0 |
0 |
unless length $ps > length $pt |
|
220
|
0 |
0 |
uc substr($ps, $_, 1) eq uc substr($pt, $_, 1) ? : |
|
301
|
0 |
0 |
if $seq[$i] ne '-' |
|
313
|
0 |
0 |
wantarray ? : |
|
339
|
0 |
0 |
$t eq $s ? : |
|
|
0 |
0 |
$t eq $wildcard || $s eq $wildcard ? : |
|
343
|
0 |
0 |
$row[$#row][1] == 2 ? : |
|
347
|
0 |
0 |
$$scores[$col + 1][1] == 1 ? : |
|
351
|
0 |
0 |
if ($gap_src >= $gap_tgt and $gap_src >= $extend) { } |
|
|
0 |
0 |
elsif ($gap_tgt >= $extend) { } |
|
363
|
0 |
0 |
if $score->[0] >= $max_score |
|
389
|
0 |
0 |
if $score->[1] == 0 |
|
390
|
0 |
0 |
if $score->[1] == 2 |
|
391
|
0 |
0 |
if $score->[1] == 1 |