blib/lib/FASTX/Seq.pm | |||
---|---|---|---|
Criterion | Covered | Total | % |
condition | 34 | 54 | 62.9 |
line | !l | l&&!r | l&&r | condition |
---|---|---|---|---|
62 | 0 | 39 | 40 | defined $seq and defined $qual |
39 | 38 | 2 | defined $seq and defined $qual and length $seq != length $qual | |
132 | 28 | 1 | 0 | defined $new_val and not $new_val =~ /^\d+$/u |
141 | 20 | 0 | 0 | defined $new_val and not $new_val =~ /^\d+$/u |
150 | 10 | 0 | 0 | defined $new_val and length $new_val != 1 |
405 | 0 | 9 | 6 | defined $self->{'comment'} && length $self->{'comment'} > 0 |
430 | 0 | 15 | 10 | defined $self->{'comment'} && length $self->{'comment'} > 0 |
455 | 7 | 0 | 6 | defined $self->{'qual'} > 0 && length $self->{'qual'} == length $self->{'seq'} |
462 | 3 | 0 | 4 | defined $self->{'qual'} > 0 && length $self->{'qual'} == length $self->{'seq'} |
line | l | !l | condition |
---|---|---|---|
70 | 68 | 9 | $name // undef |
72 | 42 | 35 | $comment // undef |
73 | 38 | 39 | $qual // undef |
320 | 5 | 0 | $code_number //= 11 |
404 | 15 | 0 | $self->{'name'} // "sequence" |
429 | 25 | 0 | $self->{'name'} // "sequence" |
line | l | !l&&r | !l&&!r | condition |
---|---|---|---|---|
52 | 0 | 0 | 65 | scalar @_ < 1 or scalar @_ > 4 |
76 | 0 | 77 | 0 | $default_quality // $FASTX::Seq::DEFAULT_QUALITY |
77 | 2 | 0 | 75 | $line_len // $FASTX::Seq::DEFAULT_LINE_LEN |
78 | 3 | 74 | 0 | $offset // $FASTX::Seq::DEFAULT_OFFSET |
468 | 10 | 0 | 5 | not defined $width or $width == 0 |