blib/lib/FASTX/Seq.pm | |||
---|---|---|---|
Criterion | Covered | Total | % |
condition | 35 | 54 | 64.8 |
line | !l | l&&!r | l&&r | condition |
---|---|---|---|---|
60 | 0 | 34 | 40 | defined $seq and defined $qual |
34 | 38 | 2 | defined $seq and defined $qual and length $seq != length $qual | |
130 | 20 | 1 | 0 | defined $new_val and not $new_val =~ /^\d+$/u |
139 | 12 | 0 | 0 | defined $new_val and not $new_val =~ /^\d+$/u |
148 | 6 | 0 | 0 | defined $new_val and length $new_val != 1 |
403 | 0 | 9 | 6 | defined $self->{'comment'} && length $self->{'comment'} > 0 |
428 | 0 | 15 | 10 | defined $self->{'comment'} && length $self->{'comment'} > 0 |
453 | 7 | 0 | 6 | defined $self->{'qual'} > 0 && length $self->{'qual'} == length $self->{'seq'} |
460 | 3 | 0 | 4 | defined $self->{'qual'} > 0 && length $self->{'qual'} == length $self->{'seq'} |
line | l | !l | condition |
---|---|---|---|
68 | 63 | 9 | $name // undef |
70 | 42 | 30 | $comment // undef |
71 | 38 | 34 | $qual // undef |
318 | 1 | 0 | $code_number //= 11 |
402 | 15 | 0 | $self->{'name'} // "sequence" |
427 | 25 | 0 | $self->{'name'} // "sequence" |
line | l | !l&&r | !l&&!r | condition |
---|---|---|---|---|
50 | 1 | 0 | 61 | scalar @_ < 1 or scalar @_ > 4 |
74 | 0 | 72 | 0 | $default_quality // $FASTX::Seq::DEFAULT_QUALITY |
75 | 2 | 0 | 70 | $line_len // $FASTX::Seq::DEFAULT_LINE_LEN |
76 | 3 | 69 | 0 | $offset // $FASTX::Seq::DEFAULT_OFFSET |
466 | 10 | 0 | 5 | not defined $width or $width == 0 |