Subroutine Coverage
| blib/lib/CracTools/Utils.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
27 |
40 |
67.5
|
| pod |
27 |
27 |
100.0
|
| line |
count |
pod |
subroutine |
|
8
|
8 |
n/a |
BEGIN |
|
9
|
8 |
n/a |
BEGIN |
|
11
|
8 |
n/a |
BEGIN |
|
12
|
8 |
n/a |
BEGIN |
|
16
|
1 |
Yes |
reverseComplement |
|
28
|
1 |
Yes |
reverse_tab |
|
43
|
0 |
Yes |
isVersionGreaterOrEqual |
|
63
|
50 |
Yes |
convertStrand |
|
68
|
0 |
Yes |
removeChrPrefix |
|
74
|
0 |
Yes |
addChrPrefix |
|
84
|
1 |
Yes |
encodePosListToBase64 |
|
117
|
1 |
Yes |
decodePosListInBase64 |
|
145
|
5 |
Yes |
seqFileIterator |
|
172
|
7 |
n/a |
__ANON__ |
|
191
|
7 |
n/a |
__ANON__ |
|
212
|
1 |
Yes |
pairedEndSeqFileIterator |
|
218
|
2 |
n/a |
__ANON__ |
|
230
|
0 |
Yes |
writeSeq |
|
242
|
1 |
Yes |
bedFileIterator |
|
247
|
1 |
Yes |
gffFileIterator |
|
254
|
1 |
Yes |
vcfFileIterator |
|
260
|
0 |
Yes |
chimCTFileIterator |
|
265
|
0 |
Yes |
bamFileIterator |
|
276
|
0 |
n/a |
__ANON__ |
|
283
|
0 |
Yes |
getSeqFromIndexedRef |
|
303
|
1 |
Yes |
parseBedLine |
|
341
|
1 |
Yes |
parseGFFLine |
|
345
|
4 |
n/a |
__ANON__ |
|
347
|
0 |
n/a |
__ANON__ |
|
374
|
1 |
Yes |
parseVCFLine |
|
394
|
0 |
Yes |
parseChimCTLine |
|
431
|
1 |
Yes |
parseSAMLineLite |
|
453
|
1 |
Yes |
parseCigarChain |
|
464
|
4 |
Yes |
getFileIterator |
|
478
|
1 |
n/a |
__ANON__ |
|
499
|
0 |
n/a |
__ANON__ |
|
528
|
35 |
n/a |
__ANON__ |
|
546
|
10 |
Yes |
getReadingFileHandle |
|
558
|
0 |
Yes |
getWritingFileHandle |
|
570
|
0 |
Yes |
getLineFromSeekPos |