Subroutine Coverage
| blib/lib/CracTools/SAMReader/SAMline.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
39 |
44 |
88.6
|
| pod |
39 |
39 |
100.0
|
| line |
count |
pod |
subroutine |
|
9
|
3 |
n/a |
BEGIN |
|
10
|
3 |
n/a |
BEGIN |
|
11
|
3 |
n/a |
BEGIN |
|
13
|
3 |
n/a |
BEGIN |
|
33
|
2 |
Yes |
hasEvent |
|
40
|
8 |
Yes |
new |
|
77
|
3 |
Yes |
isFlagged |
|
84
|
0 |
Yes |
getStrand |
|
94
|
0 |
Yes |
getOriginalSeq |
|
104
|
0 |
Yes |
getLocAsCracFormat |
|
110
|
0 |
Yes |
getPatch |
|
127
|
2 |
Yes |
line |
|
133
|
3 |
Yes |
updatedLine |
|
147
|
3 |
Yes |
qname |
|
157
|
6 |
Yes |
flag |
|
167
|
7 |
Yes |
rname |
|
177
|
3 |
Yes |
chr |
|
183
|
3 |
Yes |
pos |
|
193
|
3 |
Yes |
mapq |
|
203
|
4 |
Yes |
cigar |
|
213
|
3 |
Yes |
rnext |
|
223
|
3 |
Yes |
pnext |
|
233
|
3 |
Yes |
tlen |
|
243
|
4 |
Yes |
seq |
|
253
|
3 |
Yes |
qual |
|
263
|
1 |
Yes |
getOptionalField |
|
272
|
1 |
Yes |
getChimericAlignments |
|
300
|
1 |
Yes |
getCigarOperatorsCount |
|
313
|
1 |
Yes |
pSupport |
|
320
|
1 |
Yes |
pLoc |
|
327
|
1 |
Yes |
pairedChimera |
|
339
|
3 |
Yes |
isPairedClassified |
|
354
|
2 |
Yes |
genericInfo |
|
366
|
2 |
Yes |
isClassified |
|
388
|
3 |
Yes |
events |
|
400
|
3 |
Yes |
loadEvents |
|
487
|
2 |
Yes |
addEvent |
|
499
|
2 |
Yes |
removeEvent |
|
517
|
1 |
Yes |
updateEvent |
|
530
|
0 |
n/a |
__ANON__ |
|
591
|
2 |
Yes |
loadSamDetailed |
|
612
|
4 |
Yes |
loadPaired |
|
626
|
3 |
Yes |
expandCracLoc |
|
633
|
1 |
Yes |
compressCracLoc |