| blib/lib/CracTools/Utils.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 12 | 27 | 44.4 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 112 | 2 | 3 | 10 | defined $prev_line and not $prev_line =~ /^>/ |
| 154 | 0 | 0 | 2 | defined $entry1 and defined $entry2 |
| 341 | 0 | 0 | 0 | defined $key and defined $val |
| 399 | 2 | 0 | 3 | not defined $parsing_method and defined $type |
| 444 | 0 | 5 | 22 | $line and $line =~ /$header_regex/ |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 278 | 0 | 0 | 0 | $type eq 'gtf' or $type eq 'gff2' |
| 400 | 1 | 0 | 2 | $type =~ /gff3/i or $type eq 'gtf' |
| 1 | 0 | 2 | $type =~ /gff3/i or $type eq 'gtf' or $type eq 'gff2' | |
| 0 | 0 | 0 | $type =~ /SAM/i or $type =~ /BAM/i |