| line |
true |
false |
branch |
|
101
|
1 |
131 |
if (defined $seq and defined $qual and length $seq != length $qual) |
|
119
|
3 |
26 |
if defined $new_val |
|
127
|
1 |
8 |
if defined $new_val |
|
135
|
1 |
8 |
if defined $new_val |
|
143
|
2 |
8 |
if defined $new_val |
|
151
|
2 |
2 |
if ($start < 1 or $end > length $self->{'seq'}) |
|
157
|
1 |
1 |
defined $self->{'qual'} ? : |
|
174
|
1 |
3 |
unless (defined $self->{'id'}) |
|
179
|
2 |
1 |
if defined $self->{'desc'} |
|
193
|
1 |
5 |
unless (defined $self->{'id'}) |
|
198
|
2 |
3 |
if defined $self->{'desc'} |
|
204
|
3 |
2 |
if (defined $self->{'qual'}) { } |
|
|
1 |
1 |
elsif (not defined $qual) { } |
|
205
|
1 |
2 |
if (length $self->{'qual'} != length $self->{'seq'}) |
|
217
|
1 |
2 |
defined $qual ? : |
|
227
|
0 |
2 |
unless defined $self->{'_input_format'} |
|
239
|
1 |
6 |
unless (_is_nucleic($seq)) |
|
249
|
1 |
5 |
if defined $qual |
|
252
|
1 |
5 |
unless (defined wantarray) |
|
275
|
2 |
4 |
if $frame < 0 or $frame > 5 |
|
278
|
1 |
3 |
$frame > 2 ? : |
|
281
|
2 |
2 |
unless (_is_nucleic($seq)) |
|
290
|
1 |
1 |
unless (defined wantarray) |