| line |
true |
false |
branch |
|
101
|
1 |
131 |
if (defined $seq and defined $qual and length $seq != length $qual) |
|
119
|
3 |
26 |
if defined $new_val |
|
127
|
1 |
8 |
if defined $new_val |
|
135
|
1 |
8 |
if defined $new_val |
|
143
|
2 |
8 |
if defined $new_val |
|
151
|
2 |
2 |
if ($start < 1 or $end > length $self->{'seq'}) |
|
157
|
1 |
1 |
defined $self->{'qual'} ? : |
|
172
|
1 |
3 |
unless (defined $self->{'id'}) |
|
177
|
2 |
1 |
if defined $self->{'desc'} |
|
191
|
1 |
5 |
unless (defined $self->{'id'}) |
|
196
|
2 |
3 |
if defined $self->{'desc'} |
|
202
|
3 |
2 |
if (defined $self->{'qual'}) { } |
|
|
1 |
1 |
elsif (not defined $qual) { } |
|
203
|
1 |
2 |
if (length $self->{'qual'} != length $self->{'seq'}) |
|
215
|
1 |
2 |
defined $qual ? : |
|
225
|
0 |
2 |
unless defined $self->{'_input_format'} |
|
237
|
1 |
6 |
unless (_is_nucleic($seq)) |
|
247
|
1 |
5 |
if defined $qual |
|
250
|
1 |
5 |
unless (defined wantarray) |
|
271
|
2 |
4 |
if $frame < 0 or $frame > 5 |
|
274
|
1 |
3 |
$frame > 2 ? : |
|
277
|
2 |
2 |
unless (_is_nucleic($seq)) |
|
286
|
1 |
1 |
unless (defined wantarray) |