Subroutine Coverage
| blib/lib/Bio/Tools/Run/Infernal.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
13 |
32 |
40.6
|
| pod |
21 |
21 |
100.0
|
| line |
count |
pod |
subroutine |
|
143
|
1 |
n/a |
BEGIN |
|
144
|
1 |
n/a |
BEGIN |
|
145
|
1 |
n/a |
BEGIN |
|
147
|
1 |
n/a |
BEGIN |
|
148
|
1 |
n/a |
BEGIN |
|
149
|
1 |
n/a |
BEGIN |
|
150
|
1 |
n/a |
BEGIN |
|
371
|
1 |
Yes |
new |
|
411
|
2 |
Yes |
program |
|
426
|
8 |
Yes |
program_name |
|
452
|
0 |
Yes |
model_file |
|
468
|
3 |
Yes |
program_dir |
|
487
|
0 |
Yes |
version |
|
512
|
0 |
Yes |
run |
|
537
|
0 |
Yes |
cmsearch |
|
558
|
0 |
Yes |
cmalign |
|
592
|
0 |
Yes |
cmemit |
|
609
|
0 |
Yes |
cmbuild |
|
630
|
0 |
Yes |
cmscore |
|
646
|
0 |
Yes |
cmcalibrate |
|
662
|
0 |
Yes |
cmstat |
|
685
|
1 |
Yes |
set_parameters |
|
727
|
0 |
Yes |
reset_parameters |
|
748
|
2 |
Yes |
validate_parameters |
|
766
|
0 |
Yes |
parameters_changed |
|
780
|
0 |
Yes |
available_parameters |
|
813
|
0 |
Yes |
get_parameters |
|
849
|
0 |
Yes |
to_exe_string |
|
955
|
0 |
n/a |
_run |
|
1031
|
0 |
n/a |
_writeSeqFile |
|
1055
|
0 |
n/a |
_writeAlignFile |
|
1075
|
0 |
n/a |
_dump_params |