| line |
true |
false |
branch |
|
150
|
0 |
3 |
if $ENV{'WISEDIR'} |
|
162
|
0 |
3 |
if $attr =~ /^-/ |
|
163
|
0 |
3 |
if ($attr =~ /'PROGRAM'/i) |
|
177
|
0 |
3 |
unless $Bio::Tools::Run::Alignment::DBA::OK_FIELD{$attr} |
|
178
|
3 |
0 |
if @_ |
|
197
|
0 |
0 |
unless defined $exe |
|
241
|
0 |
0 |
unless ($infile1 and $infile2) |
|
269
|
0 |
0 |
unless ($self->outfile) |
|
279
|
0 |
0 |
unless $status == 0 |
|
299
|
0 |
0 |
unless $outfile |
|
306
|
0 |
0 |
if ($entry =~ /^>(.+)/) |
|
308
|
0 |
0 |
if (defined $name) |
|
309
|
0 |
0 |
if ($count == 0) { } |
|
|
0 |
0 |
elsif ($count == 1) { } |
|
315
|
0 |
0 |
$parse[6] eq '+' ? : |
|
330
|
0 |
0 |
$parse[6] eq '+' ? : |
|
371
|
0 |
0 |
if ($count == 1) |
|
377
|
0 |
0 |
$parse[6] eq '+' ? : |
|
432
|
0 |
0 |
if (ref $input ne 'ARRAY') { } |
|
434
|
0 |
0 |
unless (-e $input) |
|
457
|
0 |
0 |
unless scalar @{$input;} == 2 |
|
458
|
0 |
0 |
if (ref $input->[0] eq '') { } |
|
|
0 |
0 |
elsif ($input->[0]->isa('Bio::PrimarySeqI') and $input->[1]->isa('Bio::PrimarySeqI')) { } |
|
525
|
0 |
0 |
unless defined $value |
|
529
|
0 |
0 |
if ($attr_key =~ /match([ABCDabcd])/i) |
|
537
|
0 |
0 |
unless $value |
|
558
|
0 |
0 |
if (defined $seq) |
|
578
|
0 |
0 |
if (defined $seq) |