| line |
true |
false |
branch |
|
130
|
0 |
3 |
if $ENV{'PRIMATEDIR'} |
|
156
|
0 |
4 |
if $attr =~ /^-/ |
|
157
|
0 |
4 |
if ($attr =~ /^q$/i) |
|
160
|
0 |
4 |
if ($attr =~ /^t$/i) |
|
173
|
0 |
4 |
unless $Bio::Tools::Run::Primate::OK_FIELD{$attr} |
|
174
|
4 |
0 |
if @_ |
|
192
|
0 |
0 |
unless defined $exe |
|
226
|
0 |
0 |
unless $target |
|
227
|
0 |
0 |
unless $self->query |
|
231
|
0 |
0 |
unless ($query_file and $target_file) |
|
266
|
0 |
0 |
unless $status == 0 |
|
286
|
0 |
0 |
unless $outfile |
|
293
|
0 |
0 |
if ($entry =~ /primate/) |
|
329
|
0 |
0 |
ref $query eq 'ARRAY' ? : |
|
332
|
0 |
0 |
if (ref $query and $query->isa('Bio::PrimarySeqI')) { } |
|
|
0 |
0 |
elsif (-e $query) { } |
|
338
|
0 |
0 |
unless $out1->write_seq($query) |
|
348
|
0 |
0 |
unless $out1->write_seq($seq1) |
|
359
|
0 |
0 |
if (ref $target and $target->isa('Bio::PrimarySeqI')) { } |
|
|
0 |
0 |
elsif (-e $target) { } |
|
362
|
0 |
0 |
unless $out1->write_seq($target) |
|
402
|
0 |
0 |
unless defined $value |
|
406
|
0 |
0 |
unless ($attr_key =~ /QUERY/i or $attr_key =~ /TARGET/i) |
|
411
|
0 |
0 |
if ($self->quiet or $self->verbose < 0) |
|
412
|
0 |
0 |
$^O =~ /mswin/i ? : |
|
430
|
0 |
0 |
if (defined $seq) |
|
448
|
0 |
0 |
if (defined $seq) |